miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31514_oan-mir-183:mirbase
Length = 131
Score = 117 bits (59), Expect = 2e-27
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
||||||||||||||||||||||||||||||||||||||| || | | | ||||||||||
Sbjct: 17 actcctgttctgtgtatggcactggtagaattcactgtgaaaacacactatcagtgaatt 76
Query: 61 accatagggccataaacaaagcagagaaaga 91
|||| ||||||||||||| ||||||||||||
Sbjct: 77 accaaagggccataaacagagcagagaaaga 107
>34334_dre-mir-183:mirbase
Length = 98
Score = 117 bits (59), Expect = 2e-27
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
||||||||||||||||||||||||||||||||||||||| || | | | ||||||||||
Sbjct: 2 actcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaatt 61
Query: 61 accatagggccataaacaaagcagagaaaga 91
|||| ||||||||||||| ||||||||||||
Sbjct: 62 accaaagggccataaacagagcagagaaaga 92
>25808_xtr-mir-183:mirbase
Length = 97
Score = 115 bits (58), Expect = 6e-27
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 2 ctcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatta 61
|||||||||||||||||||||||||||||||||||||| || | | |||||||||||
Sbjct: 6 ctcctgttctgtgtatggcactggtagaattcactgtgaaaacacaaaatcagtgaatta 65
Query: 62 ccatagggccataaacaaagcagagaaaga 91
||||||||||||||||| ||||||||||||
Sbjct: 66 ccatagggccataaacagagcagagaaaga 95
>27407_mdo-mir-183:mirbase
Length = 88
Score = 111 bits (56), Expect = 9e-26
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
||||||||||||||||||||||||||||||||||||||| || | | | ||||||||||
Sbjct: 1 actcctgttctgtgtatggcactggtagaattcactgtgaaaacacactatcagtgaatt 60
Query: 61 accatagggccataaacaaagcagagaa 88
|||| ||||||||||||| |||||||||
Sbjct: 61 accaaagggccataaacagagcagagaa 88
>27621_sla-mir-183:mirbase
Length = 110
Score = 101 bits (51), Expect = 9e-23
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 13 actcctgttctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaatt 72
Query: 61 accatagggccataaacaaagcagaga 87
||| ||||||||||||| ||||||||
Sbjct: 73 accgaagggccataaacagagcagaga 99
>27774_mml-mir-183:mirbase
Length = 110
Score = 101 bits (51), Expect = 9e-23
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 13 actcctgttctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaatt 72
Query: 61 accatagggccataaacaaagcagaga 87
||| ||||||||||||| ||||||||
Sbjct: 73 accgaagggccataaacagagcagaga 99
>28224_mne-mir-183:mirbase
Length = 110
Score = 101 bits (51), Expect = 9e-23
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 13 actcctgttctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaatt 72
Query: 61 accatagggccataaacaaagcagaga 87
||| ||||||||||||| ||||||||
Sbjct: 73 accgaagggccataaacagagcagaga 99
>32769_rno-mir-183:mirbase
Length = 110
Score = 99.6 bits (50), Expect = 4e-22
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
|||||||| |||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 13 actcctgtcctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaatt 72
Query: 61 accatagggccataaacaaagcagagaaagacccgcga 98
||| ||||||||||||| |||||||| ||| ||||||
Sbjct: 73 accgaagggccataaacagagcagagacagatccgcga 110
>28317_ggo-mir-183:mirbase
Length = 110
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
||||||||||||||||||||||||||||||||||||||| | | | |||||||||||
Sbjct: 13 actcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaatt 72
Query: 61 accatagggccataaacaaagcagaga 87
||| ||||||||||||| ||||||||
Sbjct: 73 accgaagggccataaacagagcagaga 99
>28490_hsa-mir-183:mirbase
Length = 110
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
||||||||||||||||||||||||||||||||||||||| | | | |||||||||||
Sbjct: 13 actcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaatt 72
Query: 61 accatagggccataaacaaagcagaga 87
||| ||||||||||||| ||||||||
Sbjct: 73 accgaagggccataaacagagcagaga 99
>30106_ppa-mir-183:mirbase
Length = 110
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
||||||||||||||||||||||||||||||||||||||| | | | |||||||||||
Sbjct: 13 actcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaatt 72
Query: 61 accatagggccataaacaaagcagaga 87
||| ||||||||||||| ||||||||
Sbjct: 73 accgaagggccataaacagagcagaga 99
>30258_ptr-mir-183:mirbase
Length = 110
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
||||||||||||||||||||||||||||||||||||||| | | | |||||||||||
Sbjct: 13 actcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaatt 72
Query: 61 accatagggccataaacaaagcagaga 87
||| ||||||||||||| ||||||||
Sbjct: 73 accgaagggccataaacagagcagaga 99
>30872_ppy-mir-183:mirbase
Length = 107
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
||||||||||||||||||||||||||||||||||||||| | | | |||||||||||
Sbjct: 10 actcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaatt 69
Query: 61 accatagggccataaacaaagcagaga 87
||| ||||||||||||| ||||||||
Sbjct: 70 accgaagggccataaacagagcagaga 96
>33041_rno-mir-3553:mirbase
Length = 106
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
|||||||| |||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 95 actcctgtcctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaatt 36
Query: 61 accatagggccataaacaaagcagaga 87
||| ||||||||||||| ||||||||
Sbjct: 35 accgaagggccataaacagagcagaga 9
>34615_fru-mir-183:mirbase
Length = 70
Score = 81.8 bits (41), Expect = 8e-17
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 10 ctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaattaccataggg 69
|||||||||||||||||||||||||||||| | | | | |||||||||||||||||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgagagctcactatcagtgaattaccataggg 60
Query: 70 ccataaaca 78
|||||||||
Sbjct: 61 ccataaaca 69
>34762_tni-mir-183:mirbase
Length = 70
Score = 81.8 bits (41), Expect = 8e-17
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 10 ctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaattaccataggg 69
|||||||||||||||||||||||||||||| | | | | |||||||||||||||||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgagagctcactatcagtgaattaccataggg 60
Query: 70 ccataaaca 78
|||||||||
Sbjct: 61 ccataaaca 69
>27064_eca-mir-183:mirbase
Length = 69
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 10 ctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaattaccataggg 69
|||||||||||||||||||||||||||||| | | |||||||||||||||| ||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaaggg 60
Query: 70 ccataaaca 78
|||||||||
Sbjct: 61 ccataaaca 69
>33251_bta-mir-183:mirbase
Length = 70
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 10 ctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaattaccataggg 69
|||||||||||||||||||||||||||||| | | |||||||||||||||| ||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaaggg 60
Query: 70 ccataaaca 78
|||||||||
Sbjct: 61 ccataaaca 69
>34013_ssc-mir-183:mirbase
Length = 70
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 10 ctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaattaccataggg 69
|||||||||||||||||||||||||||||| | | |||||||||||||||| ||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaaggg 60
Query: 70 ccataaaca 78
|||||||||
Sbjct: 61 ccataaaca 69
>31899_mmu-mir-183:mirbase
Length = 70
Score = 65.9 bits (33), Expect = 5e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 10 ctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaattaccataggg 69
|||||||||||||||||||||||||||||| | | | |||||||||||||| ||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaattaccgaaggg 60
Query: 70 ccataaaca 78
|||||||||
Sbjct: 61 ccataaaca 69
>26738_cfa-mir-183:mirbase
Length = 62
Score = 60.0 bits (30), Expect = 3e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 15 tatggcactggtagaattcactgtgcaaccccgcggtcagtgaattaccatagggccata 74
||||||||||||||||||||||||| | | |||||||||||||||| |||||||||
Sbjct: 1 tatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaagggccata 60
Query: 75 aa 76
||
Sbjct: 61 aa 62
>24843_cin-mir-183:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 gtgtatggcactggtagaattcactg 37
||||||||||||||||||||||||||
Sbjct: 13 gtgtatggcactggtagaattcactg 38
>25508_pma-mir-183:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtgtatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 10 ctgtctatggcactggtagaattcactgt 38
>24687_bfl-mir-183:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tatggcactggtagaattcactg 37
|||||||||||||||||||||||
Sbjct: 21 tatggcactggtagaattcactg 43
>38871_lgi-mir-182:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 tggcactggtagaattcactg 37
|||||||||||||||||||||
Sbjct: 23 tggcactggtagaattcactg 43
>38756_cte-mir-182:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 tggcactggtagaattcactg 37
|||||||||||||||||||||
Sbjct: 23 tggcactggtagaattcactg 43
>38872_lgi-mir-183:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 atggcactggtagaattcac 35
||||||||||||||||||||
Sbjct: 22 atggcactggtagaattcac 41
