miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27410_mdo-mir-187:mirbase
Length = 81
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 6 attgtgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttg 65
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 attgtgagacctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttg 60
Query: 66 tgttgcagccagaggggcaca 86
|||||||||||||||||||||
Sbjct: 61 tgttgcagccagaggggcaca 81
>26488_tgu-mir-187:mirbase
Length = 70
Score = 139 bits (70), Expect = 4e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 16 ctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagcc 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagcc 60
Query: 76 agaggggcac 85
||||||||||
Sbjct: 61 agaggggcac 70
>31517_oan-mir-187:mirbase
Length = 79
Score = 117 bits (59), Expect = 1e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 8 tgtgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtg 67
|||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||
Sbjct: 1 tgtgagacctccggctacaacagaggacacaggagcttttcagaaccctcgtgtcttgtg 60
Query: 68 ttgcagccagaggggcaca 86
||||||||||||| |||||
Sbjct: 61 ttgcagccagaggagcaca 79
>27778_mml-mir-187:mirbase
Length = 109
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 8 tgtgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtg 67
||||||||||| |||||||||||||||| ||| ||| ||||| |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgtg 82
Query: 68 ttgcagccagaggg 81
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>28226_mne-mir-187:mirbase
Length = 109
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 8 tgtgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtg 67
||||||||||| |||||||||||||||| ||| ||| ||||| |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgtg 82
Query: 68 ttgcagccagaggg 81
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>28319_ggo-mir-187:mirbase
Length = 109
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 8 tgtgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtg 67
||||||||||| |||||||||||||||| ||| ||| ||||| |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtg 82
Query: 68 ttgcagccagaggg 81
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>28494_hsa-mir-187:mirbase
Length = 109
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 8 tgtgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtg 67
||||||||||| |||||||||||||||| ||| ||| ||||| |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtg 82
Query: 68 ttgcagccagaggg 81
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>30108_ppa-mir-187:mirbase
Length = 109
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 8 tgtgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtg 67
||||||||||| |||||||||||||||| ||| ||| ||||| |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtg 82
Query: 68 ttgcagccagaggg 81
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>30876_ppy-mir-187:mirbase
Length = 109
Score = 75.8 bits (38), Expect = 4e-15
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 8 tgtgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtg 67
||||||||||| |||||||||| ||||| ||| ||| ||||| |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacataggacccgggcgctgctctgacccctcgtgtcttgtg 82
Query: 68 ttgcagccagaggg 81
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>25810_xtr-mir-187:mirbase
Length = 82
Score = 71.9 bits (36), Expect = 7e-14
Identities = 52/56 (92%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 23 tacaacacaggacatgggagcttttctg-aaccctcgtgtcttgtgttgcagccag 77
||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 16 tacaacacaggacatgggagcttacttggaaccctcgtgtcttgtgttgcagccag 71
>34017_ssc-mir-187:mirbase
Length = 78
Score = 71.9 bits (36), Expect = 7e-14
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 10 tgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgtt 69
||||||||| ||||||||||| |||| ||| ||| ||||| |||||||||||||||||
Sbjct: 1 tgagacctcgggctacaacacgggactcgggcgctgctctgacccctcgtgtcttgtgtt 60
Query: 70 gcagccagaggg 81
|||||| |||||
Sbjct: 61 gcagccggaggg 72
>32773_rno-mir-187:mirbase
Length = 104
Score = 69.9 bits (35), Expect = 3e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 15 cctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagc 74
|||| |||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||
Sbjct: 25 cctcaggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagc 84
Query: 75 cagaggg 81
| |||||
Sbjct: 85 cggaggg 91
>33255_bta-mir-187:mirbase
Length = 109
Score = 67.9 bits (34), Expect = 1e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 8 tgtgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtg 67
||||||||||| ||||||||||| |||| ||| ||| || || |||||||||||||||
Sbjct: 23 tgtgagacctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtg 82
Query: 68 ttgcagccagaggg 81
|||||||| |||||
Sbjct: 83 ttgcagccggaggg 96
>31903_mmu-mir-187:mirbase
Length = 61
Score = 63.9 bits (32), Expect = 2e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 20 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagcc 75
|||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||
Sbjct: 4 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagcc 59
>26742_cfa-mir-187:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 6e-08
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 20 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 79
||||||||||| |||| ||| ||| || || ||||||||||||||||||||||| |||
Sbjct: 5 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccggag 64
Query: 80 gg 81
||
Sbjct: 65 gg 66
>27067_eca-mir-187:mirbase
Length = 61
Score = 48.1 bits (24), Expect = 1e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 20 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagcc 75
||||||||||| |||| ||| ||| || || |||||||||||||||||||||||
Sbjct: 4 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 59
>34337_dre-mir-187:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 ctcgtgtcttgtgttgcagccag 77
|||||||||||||||||||||||
Sbjct: 60 ctcgtgtcttgtgttgcagccag 82
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 ggctacaacacaggacatgggagct 44
|||| ||||||||||||||||||||
Sbjct: 21 ggctgcaacacaggacatgggagct 45
>34617_fru-mir-187:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 ctcgtgtcttgtgttgcagccag 77
|||||||||||||||||||||||
Sbjct: 62 ctcgtgtcttgtgttgcagccag 84
>34764_tni-mir-187:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 ctcgtgtcttgtgttgcagccag 77
|||||||||||||||||||||||
Sbjct: 40 ctcgtgtcttgtgttgcagccag 62
