miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27411_mdo-mir-190a:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcctgcc 85
|||||||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtcctgcc 85
>26744_cfa-mir-190a:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcctgcc 85
|||||||||||||||||||| ||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>27780_mml-mir-190a:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcctgcc 85
|||||||||||||||||||| ||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>28320_ggo-mir-190:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcctgcc 85
|||||||||||||||||||| ||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>28497_hsa-mir-190:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcctgcc 85
|||||||||||||||||||| ||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>30110_ppa-mir-190:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcctgcc 85
|||||||||||||||||||| ||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>30263_ptr-mir-190a:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcctgcc 85
|||||||||||||||||||| ||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>30878_ppy-mir-190:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcctgcc 85
|||||||||||||||||||| ||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>33257_bta-mir-190a:mirbase
Length = 85
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcctgcc 85
|||||||||||||||||||| ||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>31518_oan-mir-190a:mirbase
Length = 78
Score = 145 bits (73), Expect = 6e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 8 ctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacata 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacata 64
Query: 68 ttcctacagtgtc 80
|||||||||||||
Sbjct: 65 ttcctacagtgtc 77
>32775_rno-mir-190:mirbase
Length = 85
Score = 145 bits (73), Expect = 6e-36
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcctgcc 85
|| ||||||||||||||||| ||||
Sbjct: 61 aagcatattcctacagtgtcttgcc 85
>26489_tgu-mir-190:mirbase
Length = 72
Score = 141 bits (71), Expect = 9e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 6 gactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaaca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaaca 61
Query: 66 tattcctacag 76
|||||||||||
Sbjct: 62 tattcctacag 72
>27070_eca-mir-190:mirbase
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 10 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacatatt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacatatt 60
Query: 70 cctacag 76
|||||||
Sbjct: 61 cctacag 67
>34338_dre-mir-190:mirbase
Length = 126
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
Query: 61 aaacatattcctacagtgtcctgc 84
||||||||||||||||||||||||
Sbjct: 92 aaacatattcctacagtgtcctgc 115
>31906_mmu-mir-190:mirbase
Length = 67
Score = 125 bits (63), Expect = 5e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 10 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacatatt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaagcatatt 60
Query: 70 cctacag 76
|||||||
Sbjct: 61 cctacag 67
>34618_fru-mir-190:mirbase
Length = 67
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 10 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacatatt 69
|||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 1 ctgtctgatatgtttgatatattaggttgttattcagtccaactatatatcaaacatatt 60
Query: 70 cctacag 76
|||||||
Sbjct: 61 cctacag 67
>34765_tni-mir-190:mirbase
Length = 67
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 10 ctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacatatt 69
|||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 1 ctgtctgatatgtttgatatattaggttgttattcagtccaactatatatcaaacatatt 60
Query: 70 cctacag 76
|||||||
Sbjct: 61 cctacag 67
>25510_pma-mir-190a:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 ccaactatatatcaaacatattc 70
|||||||||||||||||||||||
Sbjct: 49 ccaactatatatcaaacatattc 71
>31519_oan-mir-190b:mirbase
Length = 144
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/34 (94%), Gaps = 2/34 (5%)
Strand = Plus / Plus
Query: 8 ctctgtgtgatatgtttgatatattaggttgtta 41
|||||||||||||||||| ||||||||||||||
Sbjct: 24 ctctgtgtgatatgtttg--atattaggttgtta 55
>32776_rno-mir-190b:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/33 (93%), Gaps = 2/33 (6%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatatattaggttgtta 41
||||||||||||||||| ||||||||||||||
Sbjct: 5 tctgtgtgatatgtttg--atattaggttgtta 35
>26745_cfa-mir-190b:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>27071_eca-mir-190b:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>27412_mdo-mir-190b:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 3 tctgtgtgatatgtttgatat 23
>27781_mml-mir-190b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>28498_hsa-mir-190b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>30264_ptr-mir-190b:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>30879_ppy-mir-190b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>31907_mmu-mir-190b:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>33258_bta-mir-190b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>34018_ssc-mir-190:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tctgtgtgatatgtttgatat 29
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
