miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26491_tgu-mir-193b:mirbase
Length = 69
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 9 gctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaaagtcccag 68
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 gctgggtctttgcgggcgagatgagaggttcctgtcttcaactggcctacaaagtcccag 60
Query: 69 ttctcggct 77
|||||||||
Sbjct: 61 ttctcggct 69
>28501_hsa-mir-193a:mirbase
Length = 88
Score = 83.8 bits (42), Expect = 2e-17
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 11 agctgagggctgggtctttgcgggcgagatgagggtgtcg---gatcaactggcctacaa 67
Query: 61 agtcccagttctcggc 76
||||||||||||||||
Sbjct: 68 agtcccagttctcggc 83
>28502_hsa-mir-193a:mirbase
Length = 88
Score = 83.8 bits (42), Expect = 2e-17
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 11 agctgagggctgggtctttgcgggcgagatgagggtgtcg---gatcaactggcctacaa 67
Query: 61 agtcccagttctcggc 76
||||||||||||||||
Sbjct: 68 agtcccagttctcggc 83
>30267_ptr-mir-193a:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 11 agctgagggctgggtctttgcgggcgagatgagggtgtcg---gatcaactggcctacaa 67
Query: 61 agtcccagttctcggc 76
||||||||||||||||
Sbjct: 68 agtcccagttctcggc 83
>34021_ssc-mir-193a:mirbase
Length = 80
Score = 81.8 bits (41), Expect = 6e-17
Identities = 69/76 (90%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 6 agctgagggctgggtctttgcgggcgagatgag-ggt--gttggttcaactggcctacaa 62
Query: 61 agtcccagttctcggc 76
||||||||| ||||||
Sbjct: 63 agtcccagtcctcggc 78
>34022_ssc-mir-193a:mirbase
Length = 80
Score = 81.8 bits (41), Expect = 6e-17
Identities = 69/76 (90%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 6 agctgagggctgggtctttgcgggcgagatgag-ggt--gttggttcaactggcctacaa 62
Query: 61 agtcccagttctcggc 76
||||||||| ||||||
Sbjct: 63 agtcccagtcctcggc 78
>27074_eca-mir-193a:mirbase
Length = 81
Score = 75.8 bits (38), Expect = 4e-15
Identities = 63/69 (91%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 4 agctgagggctgggtctttgcgggcgagatgag-ggt--gtcagttcaactggcctacaa 60
Query: 61 agtcccagt 69
|||||||||
Sbjct: 61 agtcccagt 69
>27075_eca-mir-193a:mirbase
Length = 81
Score = 75.8 bits (38), Expect = 4e-15
Identities = 63/69 (91%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 4 agctgagggctgggtctttgcgggcgagatgag-ggt--gtcagttcaactggcctacaa 60
Query: 61 agtcccagt 69
|||||||||
Sbjct: 61 agtcccagt 69
>27784_mml-mir-193a:mirbase
Length = 85
Score = 75.8 bits (38), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 8 agctgagggctgggtctttgcgggcgagatgagggtgtcg---gatcaactggcctacaa 64
Query: 61 agtcccagttctcggc 76
||||||||| ||||||
Sbjct: 65 agtcccagtcctcggc 80
>27785_mml-mir-193a:mirbase
Length = 85
Score = 75.8 bits (38), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 8 agctgagggctgggtctttgcgggcgagatgagggtgtcg---gatcaactggcctacaa 64
Query: 61 agtcccagttctcggc 76
||||||||| ||||||
Sbjct: 65 agtcccagtcctcggc 80
>30882_ppy-mir-193a:mirbase
Length = 88
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
|||||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct: 11 agctgagggctgggtctttgcgggcgagatga-aggt--gtcggatcaactggcctacaa 67
Query: 61 agtcccagttctcggc 76
||||||||| ||||||
Sbjct: 68 agtcccagtcctcggc 83
>30883_ppy-mir-193a:mirbase
Length = 88
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
|||||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct: 11 agctgagggctgggtctttgcgggcgagatga-aggt--gtcggatcaactggcctacaa 67
Query: 61 agtcccagttctcggc 76
||||||||| ||||||
Sbjct: 68 agtcccagtcctcggc 83
>33261_bta-mir-193a:mirbase
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
||||||| |||||||||||||||||||||||| |||| || ||||||||||||||||
Sbjct: 5 agctgagagctgggtctttgcgggcgagatga-aggt--gtcggttcaactggcctacaa 61
Query: 61 agtcccagttctcggc 76
||||||||| ||||||
Sbjct: 62 agtcccagtcctcggc 77
>33262_bta-mir-193a:mirbase
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
||||||| |||||||||||||||||||||||| |||| || ||||||||||||||||
Sbjct: 5 agctgagagctgggtctttgcgggcgagatga-aggt--gtcggttcaactggcctacaa 61
Query: 61 agtcccagttctcggc 76
||||||||| ||||||
Sbjct: 62 agtcccagtcctcggc 77
>32779_rno-mir-193:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 68/77 (88%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
||||||| ||||||||||||||||| ||||||| ||| || ||||||||||||||||
Sbjct: 10 agctgagagctgggtctttgcgggcaagatgag-ggt--gtcagttcaactggcctacaa 66
Query: 61 agtcccagttctcggct 77
||||||||| |||||||
Sbjct: 67 agtcccagtcctcggct 83
>33036_rno-mir-3549:mirbase
Length = 112
Score = 67.9 bits (34), Expect = 1e-12
Identities = 68/77 (88%), Gaps = 3/77 (3%)
Strand = Plus / Minus
Query: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
||||||| ||||||||||||||||| ||||||| ||| || ||||||||||||||||
Sbjct: 92 agctgagagctgggtctttgcgggcaagatgag-ggt--gtcagttcaactggcctacaa 36
Query: 61 agtcccagttctcggct 77
||||||||| |||||||
Sbjct: 35 agtcccagtcctcggct 19
>26748_cfa-mir-193a:mirbase
Length = 56
Score = 58.0 bits (29), Expect = 9e-10
Identities = 52/59 (88%), Gaps = 3/59 (5%)
Strand = Plus / Plus
Query: 11 tgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaaagtcccagt 69
||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 1 tgggtctttgcgggcgagatgagggtgtcgg---ttcaactggcctacaaagtcccagt 56
>27414_mdo-mir-193:mirbase
Length = 66
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 ttcaactggcctacaaagtcccagttctc 73
|||||||||||||||||||||||||||||
Sbjct: 38 ttcaactggcctacaaagtcccagttctc 66
>34342_dre-mir-193a-2:mirbase
Length = 98
Score = 58.0 bits (29), Expect = 9e-10
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 8 ggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaaagtccca 67
|||||||||||||||||| || |||| | | | | |||||||||||||||||||||||
Sbjct: 15 ggctgggtctttgcgggcaaggtgagttttccttttattcaactggcctacaaagtccca 74
Query: 68 gttctcggc 76
||| |||||
Sbjct: 75 gttttcggc 83
>34343_dre-mir-193a-3:mirbase
Length = 98
Score = 58.0 bits (29), Expect = 9e-10
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 8 ggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaaagtccca 67
|||||||||||||||||| || |||| | | | | |||||||||||||||||||||||
Sbjct: 15 ggctgggtctttgcgggcaaggtgagttttccttttattcaactggcctacaaagtccca 74
Query: 68 gttctcggc 76
||| |||||
Sbjct: 75 gttttcggc 83
>31910_mmu-mir-193:mirbase
Length = 66
Score = 56.0 bits (28), Expect = 4e-09
Identities = 55/63 (87%), Gaps = 7/63 (11%)
Strand = Plus / Plus
Query: 9 gctgggtctttgcgggcgagatgagaggttcgtgtc--ttcaactggcctacaaagtccc 66
||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct: 5 gctgggtctttgcgggcaagatgagag-----tgtcagttcaactggcctacaaagtccc 59
Query: 67 agt 69
|||
Sbjct: 60 agt 62
>34341_dre-mir-193a-1:mirbase
Length = 99
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 46 tcaactggcctacaaagtcccagtt 70
|||||||||||||||||||||||||
Sbjct: 59 tcaactggcctacaaagtcccagtt 83
>34620_fru-mir-193:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 ttcaactggcctacaaagtcccagt 69
|||||||||||||||||||||||||
Sbjct: 47 ttcaactggcctacaaagtcccagt 71
>34767_tni-mir-193:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 ttcaactggcctacaaagtcccagt 69
|||||||||||||||||||||||||
Sbjct: 42 ttcaactggcctacaaagtcccagt 66
>33263_bta-mir-193a-2:mirbase
Length = 53
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 48 aactggcctacaaagtcccag 68
|||||||||||||||||||||
Sbjct: 51 aactggcctacaaagtcccag 31
