miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26490_tgu-mir-193a:mirbase
Length = 72
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 11 agtcggggttttgggggcgagatgagcttatgttttatccaactggcccacaaagtcccg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtcggggttttgggggcgagatgagcttatgttttatccaactggcccacaaagtcccg 60
Query: 71 cttttggtggtc 82
||||||||||||
Sbjct: 61 cttttggtggtc 72
>31522_oan-mir-193:mirbase
Length = 95
Score = 133 bits (67), Expect = 2e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 5 ttccagagtcggggttttgggggcgagatgagcttatgttttatccaactggcccacaaa 64
||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct: 9 ttccagagtcggggttttgagggcgagatgagtttgtgttttatccaactggcccacaaa 68
Query: 65 gtcccgcttttggtggtca 83
|||||||||||||||||||
Sbjct: 69 gtcccgcttttggtggtca 87
>33264_bta-mir-193b:mirbase
Length = 83
Score = 121 bits (61), Expect = 8e-29
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 1 gtggttccagagtcggggttttgggggcgagatgagcttatgttttatccaactggccca 60
||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 1 gtggtcccagaatcggggttttgagggcgagatgagtttatgttttatccaactggccca 60
Query: 61 caaagtcccgcttttgg 77
|||||||||||||||||
Sbjct: 61 caaagtcccgcttttgg 77
>27076_eca-mir-193b:mirbase
Length = 69
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 8 cagagtcggggttttgggggcgagatgagcttatgttttatccaactggcccacaaagtc 67
|||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 cagaatcggggttttgagggcgagatgagtttatgttttatccaactggcccacaaagtc 60
Query: 68 ccgcttttg 76
|||||||||
Sbjct: 61 ccgcttttg 69
>31911_mmu-mir-193b:mirbase
Length = 79
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 7 ccagagtcggggttttgggggcgagatgagcttatgttttatccaactggcccacaaagt 66
||||| ||||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct: 4 ccagaatcggggttttgagggcgagatgagtttgtgttttatccaactggcccacaaagt 63
Query: 67 cccgcttttgg 77
|||||||||||
Sbjct: 64 cccgcttttgg 74
>27786_mml-mir-193b:mirbase
Length = 83
Score = 107 bits (54), Expect = 1e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 8 cagagtcggggttttgggggcgagatgagcttatgttttatccaactggcccacaaagtc 67
|||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 8 cagaatcggggttttgagggcgagatgagtttatgttttatccaactggccctcaaagtc 67
Query: 68 ccgcttttgg 77
||||||||||
Sbjct: 68 ccgcttttgg 77
>28503_hsa-mir-193b:mirbase
Length = 83
Score = 107 bits (54), Expect = 1e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 8 cagagtcggggttttgggggcgagatgagcttatgttttatccaactggcccacaaagtc 67
|||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 8 cagaatcggggttttgagggcgagatgagtttatgttttatccaactggccctcaaagtc 67
Query: 68 ccgcttttgg 77
||||||||||
Sbjct: 68 ccgcttttgg 77
>30268_ptr-mir-193b:mirbase
Length = 82
Score = 107 bits (54), Expect = 1e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 8 cagagtcggggttttgggggcgagatgagcttatgttttatccaactggcccacaaagtc 67
|||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 7 cagaatcggggttttgagggcgagatgagtttatgttttatccaactggccctcaaagtc 66
Query: 68 ccgcttttgg 77
||||||||||
Sbjct: 67 ccgcttttgg 76
>30884_ppy-mir-193b:mirbase
Length = 83
Score = 107 bits (54), Expect = 1e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 8 cagagtcggggttttgggggcgagatgagcttatgttttatccaactggcccacaaagtc 67
|||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 8 cagaatcggggttttgagggcgagatgagtttatgttttatccaactggccctcaaagtc 67
Query: 68 ccgcttttgg 77
||||||||||
Sbjct: 68 ccgcttttgg 77
>25813_xtr-mir-193:mirbase
Length = 83
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 gtggttccagagtcggggttttgggggcgagatgagcttatgttttatccaactggccca 60
|||||| | |||||||| |||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 1 gtggtttcggagtcgggattttgggggcgagatgagctaatgatttatccaactggcccg 60
Query: 61 caaagtcccgctt 73
|||||||||||||
Sbjct: 61 caaagtcccgctt 73
>26749_cfa-mir-193b:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 14 cggggttttgggggcgagatgagcttatgttttatccaactggcccacaaagtcccgct 72
|||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 1 cggggttttgagggcgagatgagtttatgtttgatccaactggcccacaaagtcccgct 59
>34344_dre-mir-193b:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 tatccaactggcccacaaagtcccgctt 73
|||||||||||||| |||||||||||||
Sbjct: 47 tatccaactggcccgcaaagtcccgctt 74
