miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26492_tgu-mir-194-1:mirbase
Length = 72
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 4 tgctctcatatgtaacagcaactccatgtggactacactgacttccagtggagatgctgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctctcatatgtaacagcaactccatgtggactacactgacttccagtggagatgctgt 60
Query: 64 tacttttgat 73
||||||||||
Sbjct: 61 tacttttgat 70
>26493_tgu-mir-194-2:mirbase
Length = 72
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 4 tgctctcatatgtaacagcaactccatgtggactacactgacttccagtggagatgctgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctctcatatgtaacagcaactccatgtggactacactgacttccagtggagatgctgt 60
Query: 64 tacttttgat 73
||||||||||
Sbjct: 61 tacttttgat 70
>31523_oan-mir-194-1:mirbase
Length = 98
Score = 89.7 bits (45), Expect = 3e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 9 tcatatgtaacagcaactccatgtggactacactgacttccagtggagatgctgttactt 68
||||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 17 tcatatgtaacagcaactccatgtggattatgctgatttccagtggagaggctgttactt 76
Query: 69 ttgat 73
|||||
Sbjct: 77 ttgat 81
>25814_xtr-mir-194-1:mirbase
Length = 80
Score = 71.9 bits (36), Expect = 6e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtggactacactgacttccagtggagatgctgttacttttgat 73
|||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggacttgtccgtattccagtggagatgctgttacttttgat 74
>27078_eca-mir-194-2:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 71
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgggtaccaatttccagtggagatgctgttacttttg 74
Query: 72 at 73
||
Sbjct: 75 at 76
>27514_age-mir-194:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 71
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
Query: 72 at 73
||
Sbjct: 75 at 76
>27787_mml-mir-194-1:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 71
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
Query: 72 at 73
||
Sbjct: 75 at 76
>28228_mne-mir-194:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 71
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
Query: 72 at 73
||
Sbjct: 75 at 76
>28321_ggo-mir-194:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 71
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
Query: 72 at 73
||
Sbjct: 75 at 76
>28504_hsa-mir-194-1:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 71
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
Query: 72 at 73
||
Sbjct: 75 at 76
>30269_ptr-mir-194:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 71
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
Query: 72 at 73
||
Sbjct: 75 at 76
>25667_xla-mir-194:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 ttccagtggagatgctgttacttttgat 73
||||||||||||||||||||||||||||
Sbjct: 46 ttccagtggagatgctgttacttttgat 73
>33265_bta-mir-194-1:mirbase
Length = 97
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 ttccagtggagatgctgttacttttgat 73
||||||||||||||||||||||||||||
Sbjct: 55 ttccagtggagatgctgttacttttgat 82
>30885_ppy-mir-194:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 1e-08
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtggac--tacactgacttccagtggagatgctgttacttttg 71
||||||||||||||||||||||| | || | |||||||||||||| |||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttacttttg 74
Query: 72 at 73
||
Sbjct: 75 at 76
>32780_rno-mir-194-1:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 1e-08
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtggac--tacactgacttccagtggagatgctgttacttttg 71
||||||||||||||||||||||| | ||| || | ||||||||| ||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgcacaga-tcccagtggagctgctgttacttttg 73
Query: 72 at 73
||
Sbjct: 74 at 75
>31912_mmu-mir-194-1:mirbase
Length = 67
Score = 50.1 bits (25), Expect = 2e-07
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtggactacact-gacttccagtggagatgctgttacttttga 72
|||||||||||||||||||||||| || | ||||||||||| ||||||||||| |||
Sbjct: 7 tgtaacagcaactccatgtggactgtgctcggattccagtggagctgctgttacttctga 66
Query: 73 t 73
|
Sbjct: 67 t 67
>26750_cfa-mir-194:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 ttccagtggagatgctgttacttt 69
||||||||||||||||||||||||
Sbjct: 35 ttccagtggagatgctgttacttt 58
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtgga 35
||||||||||||||||||||||
Sbjct: 1 tgtaacagcaactccatgtgga 22
>34023_ssc-mir-194:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 ttccagtggagatgctgttacttttga 72
||||||||||||||||||||| |||||
Sbjct: 45 ttccagtggagatgctgttacctttga 71
>34024_ssc-mir-194:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 ttccagtggagatgctgttacttttga 72
||||||||||||||||||||| |||||
Sbjct: 45 ttccagtggagatgctgttacctttga 71
>34621_fru-mir-194:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 atgtaacagcaactccatgtgga 35
|||||||||||||||||||||||
Sbjct: 7 atgtaacagcaactccatgtgga 29
>34768_tni-mir-194:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 atgtaacagcaactccatgtgga 35
|||||||||||||||||||||||
Sbjct: 10 atgtaacagcaactccatgtgga 32
>25514_pma-mir-194:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtgga 35
||||||||||||||||||||||
Sbjct: 17 tgtaacagcaactccatgtgga 38
>25815_xtr-mir-194-2:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtgga 35
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>27077_eca-mir-194:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtgga 35
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>27788_mml-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtgga 35
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>28505_hsa-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtgga 35
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>31524_oan-mir-194-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtgga 35
||||||||||||||||||||||
Sbjct: 18 tgtaacagcaactccatgtgga 39
>31913_mmu-mir-194-2:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtgga 35
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>32781_rno-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtgga 35
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>33266_bta-mir-194-2:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtgga 35
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>34345_dre-mir-194a:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tgtaacagcaactccatgtgga 35
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
