miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33268_bta-mir-196a-1:mirbase
Length = 102
Score = 67.9 bits (34), Expect = 1e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 1 tgaactagaactgctctgtgaattaggtagtttcatgttgttgggc 46
|||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 1 tgaactggaactgctgagtgaattaggtagtttcatgttgttgggc 46
>25986_gga-mir-196-2:mirbase
Length = 94
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 9 aactgctctgtgaattaggtagtttcatgttgttggg 45
|||||||||||| |||||||||||||||||||||||
Sbjct: 1 aactgctctgtggtttaggtagtttcatgttgttggg 37
>26752_cfa-mir-196a-1:mirbase
Length = 91
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttgggc 46
|||||||||||||||||||||||||||||
Sbjct: 9 gtgaattaggtagtttcatgttgttgggc 37
>27790_mml-mir-196a-1:mirbase
Length = 70
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttgggc 46
|||||||||||||||||||||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttgggc 29
>28323_ggo-mir-196-1:mirbase
Length = 70
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttgggc 46
|||||||||||||||||||||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttgggc 29
>28507_hsa-mir-196a-1:mirbase
Length = 70
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttgggc 46
|||||||||||||||||||||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttgggc 29
>30887_ppy-mir-196-1:mirbase
Length = 70
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttgggc 46
|||||||||||||||||||||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttgggc 29
>30271_ptr-mir-196a-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 19 tgaattaggtagtttcatgttgttgggc 46
||||||||||||||||||||||||||||
Sbjct: 1 tgaattaggtagtttcatgttgttgggc 28
>27080_eca-mir-196a:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttgggc 46
|||| ||||||||||||||||||||||||
Sbjct: 1 gtgagttaggtagtttcatgttgttgggc 29
>27416_mdo-mir-196b:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 9 aactgctctgtgaattaggtagtttcatgttgttggg 45
||||| ||||||| |||||||||||| ||||||||||
Sbjct: 1 aactggtctgtgatttaggtagtttcctgttgttggg 37
>31526_oan-mir-196b:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 9 aactgctctgtgaattaggtagtttcatgttgttggg 45
||||| ||||||| |||||||||||| ||||||||||
Sbjct: 1 aactggtctgtgatttaggtagtttcctgttgttggg 37
>31915_mmu-mir-196a-1:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttgggc 46
||||| |||||||||||||||||||||||
Sbjct: 18 gtgaagtaggtagtttcatgttgttgggc 46
>34349_dre-mir-196b:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 15 tctgtgaattaggtagtttcatgttgttgggct 47
||||||| ||||||||||||| |||||||||||
Sbjct: 2 tctgtgatttaggtagtttcaagttgttgggct 34
>25515_pma-mir-196a:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 24 taggtagtttcatgttgttgggcttta 50
|||||||||||||||||||||| ||||
Sbjct: 11 taggtagtttcatgttgttggggttta 37
>25816_xtr-mir-196a:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>25987_gga-mir-196-3:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 23 ttaggtagtttcatgttgttggg 45
>27515_age-mir-196:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>27580_lla-mir-196:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>27791_mml-mir-196a-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>28324_ggo-mir-196-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>28508_hsa-mir-196a-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>30112_ppa-mir-196:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>30272_ptr-mir-196a-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>30888_ppy-mir-196-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>31525_oan-mir-196a:mirbase
Length = 114
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 28 ttaggtagtttcatgttgttggg 50
>31916_mmu-mir-196a-2:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>32783_rno-mir-196a:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>33269_bta-mir-196a-2:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>34026_ssc-mir-196a:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 21 ttaggtagtttcatgttgttggg 43
>34347_dre-mir-196a-1:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 20 ttaggtagtttcatgttgttggg 42
>34348_dre-mir-196a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 10 ttaggtagtttcatgttgttggg 32
>34622_fru-mir-196a-1:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>34623_fru-mir-196a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 10 ttaggtagtttcatgttgttggg 32
>34769_tni-mir-196a-1:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>34770_tni-mir-196a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttggg 45
|||||||||||||||||||||||
Sbjct: 10 ttaggtagtttcatgttgttggg 32
>26753_cfa-mir-196a-2:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 taggtagtttcatgttgttggg 45
||||||||||||||||||||||
Sbjct: 1 taggtagtttcatgttgttggg 22
>34351_dre-mir-196d:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttgggct 47
|||| ||||||||||| |||||||||||||
Sbjct: 2 gtgatttaggtagttttatgttgttgggct 31
>31917_mmu-mir-196b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 9 aactgctctgtgaattaggtagtttcatgttgttggg 45
||||| || |||| |||||||||||| ||||||||||
Sbjct: 1 aactggtcggtgatttaggtagtttcctgttgttggg 37
>32784_rno-mir-196b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 9 aactgctctgtgaattaggtagtttcatgttgttggg 45
||||| || |||| |||||||||||| ||||||||||
Sbjct: 1 aactggtcggtgatttaggtagtttcctgttgttggg 37
>32785_rno-mir-196c:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttgggc 46
||||| ||||||||||| |||||||||||
Sbjct: 5 gtgaagtaggtagtttcgtgttgttgggc 33
>33270_bta-mir-196b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 9 aactgctctgtgaattaggtagtttcatgttgttggg 45
||||| || |||| |||||||||||| ||||||||||
Sbjct: 1 aactggtcggtgatttaggtagtttcctgttgttggg 37
>25817_xtr-mir-196b:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 23 ttaggtagtttcatgttgttgggc 46
||||||||||| ||||||||||||
Sbjct: 15 ttaggtagttttatgttgttgggc 38
>27081_eca-mir-196b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttggg 45
|||| |||||||||||| ||||||||||
Sbjct: 9 gtgatttaggtagtttcctgttgttggg 36
>27792_mml-mir-196b:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttggg 45
|||| |||||||||||| ||||||||||
Sbjct: 9 gtgatttaggtagtttcctgttgttggg 36
>28509_hsa-mir-196b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttggg 45
|||| |||||||||||| ||||||||||
Sbjct: 9 gtgatttaggtagtttcctgttgttggg 36
>30273_ptr-mir-196b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttggg 45
|||| |||||||||||| ||||||||||
Sbjct: 9 gtgatttaggtagtttcctgttgttggg 36
>30889_ppy-mir-196b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttggg 45
|||| |||||||||||| ||||||||||
Sbjct: 9 gtgatttaggtagtttcctgttgttggg 36
>34027_ssc-mir-196b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttggg 45
|||| |||||||||||| ||||||||||
Sbjct: 8 gtgatttaggtagtttcctgttgttggg 35
>34028_ssc-mir-196b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 18 gtgaattaggtagtttcatgttgttggg 45
|||| |||||||||||| ||||||||||
Sbjct: 8 gtgatttaggtagtttcctgttgttggg 35
>34624_fru-mir-196b:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 24 taggtagtttcatgttgttgggct 47
|||||||||||| |||||||||||
Sbjct: 8 taggtagtttcaagttgttgggct 31
>34771_tni-mir-196b:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 24 taggtagtttcatgttgttgggct 47
|||||||||||| |||||||||||
Sbjct: 8 taggtagtttcaagttgttgggct 31
