miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25873_gga-let-7d:mirbase
Length = 103
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 1 gctcctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggag 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 6 gctcctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggag 65
Query: 61 gtaactatacaacctgctgcctttcttagggc 92
||||||||||||||||||||||||||||||||
Sbjct: 66 gtaactatacaacctgctgcctttcttagggc 97
>27322_mdo-let-7d:mirbase
Length = 106
Score = 159 bits (80), Expect = 4e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 1 gctcctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggag 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 6 gctcctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggag 65
Query: 61 gtaactatacaacctgctgcctttcttagggc 92
|||||||||||||||||||||||||||||||
Sbjct: 66 ttaactatacaacctgctgcctttcttagggc 97
>31411_oan-let-7d:mirbase
Length = 116
Score = 151 bits (76), Expect = 1e-37
Identities = 88/92 (95%)
Strand = Plus / Plus
Query: 1 gctcctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggag 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
Sbjct: 14 gctcctaggaagaggtagtaggttgcatagttttagggcagtgattttgctcataaggtg 73
Query: 61 gtaactatacaacctgctgcctttcttagggc 92
|||||||||||||||||||||||||||||||
Sbjct: 74 ttaactatacaacctgctgcctttcttagggc 105
>27634_mml-let-7d:mirbase
Length = 87
Score = 149 bits (75), Expect = 4e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 4 cctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggaggta 63
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggta 60
Query: 64 actatacaacctgctgcctttcttagg 90
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>28344_hsa-let-7d:mirbase
Length = 87
Score = 149 bits (75), Expect = 4e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 4 cctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggaggta 63
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggta 60
Query: 64 actatacaacctgctgcctttcttagg 90
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>30736_ppy-let-7d:mirbase
Length = 87
Score = 149 bits (75), Expect = 4e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 4 cctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggaggta 63
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggta 60
Query: 64 actatacaacctgctgcctttcttagg 90
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>30131_ptr-let-7d:mirbase
Length = 86
Score = 147 bits (74), Expect = 2e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 5 ctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggaggtaa 64
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
Query: 65 ctatacaacctgctgcctttcttagg 90
|||||| |||||||||||||||||||
Sbjct: 61 ctatacgacctgctgcctttcttagg 86
>32643_rno-let-7d:mirbase
Length = 98
Score = 143 bits (72), Expect = 2e-35
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 1 gctcctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggag 60
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct: 4 gctcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggag 63
Query: 61 gtaactatacaacctgctgcctttcttagggc 92
||||||||| |||||||||||||||||||||
Sbjct: 64 ttaactatacgacctgctgcctttcttagggc 95
>33099_rno-mir-3596b:mirbase
Length = 95
Score = 143 bits (72), Expect = 2e-35
Identities = 87/92 (94%)
Strand = Plus / Minus
Query: 1 gctcctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggag 60
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct: 93 gctcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggag 34
Query: 61 gtaactatacaacctgctgcctttcttagggc 92
||||||||| |||||||||||||||||||||
Sbjct: 33 ttaactatacgacctgctgcctttcttagggc 2
>26932_eca-let-7d:mirbase
Length = 87
Score = 141 bits (71), Expect = 1e-34
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 4 cctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggaggta 63
||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagata 60
Query: 64 actatacaacctgctgcctttcttagg 90
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>33113_bta-let-7d:mirbase
Length = 87
Score = 141 bits (71), Expect = 1e-34
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 4 cctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggaggta 63
||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttcgggcagggattttgcccacaaggaggta 60
Query: 64 actatacaacctgctgcctttcttagg 90
||||||| |||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>31757_mmu-let-7d:mirbase
Length = 103
Score = 139 bits (70), Expect = 4e-34
Identities = 85/90 (94%)
Strand = Plus / Plus
Query: 3 tcctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggaggt 62
||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| |
Sbjct: 8 tcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggagtt 67
Query: 63 aactatacaacctgctgcctttcttagggc 92
|||||||| |||||||||||||||||||||
Sbjct: 68 aactatacgacctgctgcctttcttagggc 97
>26375_tgu-let-7a-1:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttagggc 39
|||||||||||||| |||||||||||||
Sbjct: 12 gaggtagtaggttgtatagttttagggc 39
>25868_gga-let-7a-1:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 14 gaggtagtaggttgtatagttttaggg 40
>25870_gga-let-7a-3:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 5 gaggtagtaggttgtatagttttaggg 31
>26377_tgu-let-7a-3:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 62 gaggtagtaggttgtatagttttaggg 88
>27318_mdo-let-7a-1:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 16 gaggtagtaggttgtatagttttaggg 42
>27629_mml-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>28339_hsa-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>30126_ptr-let-7a-1:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 6 gaggtagtaggttgtatagttttaggg 32
>30731_ppy-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>31752_mmu-let-7a-1:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 14 gaggtagtaggttgtatagttttaggg 40
>32638_rno-let-7a-1:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 14 gaggtagtaggttgtatagttttaggg 40
>33108_bta-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>33899_ssc-let-7a-2:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 12 gaggtagtaggttgtatagttttaggg 38
>34165_dre-let-7a-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 12 gaggtagtaggttgtatagttttaggg 38
>34526_fru-let-7a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 5 gaggtagtaggttgtatagttttaggg 31
>34674_tni-let-7a-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 13 gaggtagtaggttgtatagttttaggg 39
>25871_gga-let-7b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 56 aggaggtaactatacaacctgctgcctt 83
||||| |||||||||||||| |||||||
Sbjct: 53 aggagataactatacaacctactgcctt 80
>26379_tgu-let-7b:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 56 aggaggtaactatacaacctgctgcctt 83
||||| |||||||||||||| |||||||
Sbjct: 58 aggagataactatacaacctactgcctt 85
>27632_mml-let-7b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttagggcagggattttgctcagaaggaggtaactataca 71
|||||||||||||| | |||| ||||||| ||| |||| | || || ||||||||||
Sbjct: 7 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 66
Query: 72 acctgctgcctt 83
|||| |||||||
Sbjct: 67 acctactgcctt 78
>30129_ptr-let-7b:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttagggcagggattttgctcagaaggaggtaactataca 71
|||||||||||||| | |||| ||||||| ||| |||| | || || ||||||||||
Sbjct: 6 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 65
Query: 72 acctgctgcctt 83
|||| |||||||
Sbjct: 66 acctactgcctt 77
>30734_ppy-let-7b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttagggcagggattttgctcagaaggaggtaactataca 71
|||||||||||||| | |||| ||||||| ||| |||| | || || ||||||||||
Sbjct: 7 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 66
Query: 72 acctgctgcctt 83
|||| |||||||
Sbjct: 67 acctactgcctt 78
>34171_dre-let-7b:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 56 aggaggtaactatacaacctgctgcctt 83
||||| |||||||||||||| |||||||
Sbjct: 57 aggagttaactatacaacctactgcctt 84
>34528_fru-let-7b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 56 aggaggtaactatacaacctgctgcctt 83
||||| |||||||||||||| |||||||
Sbjct: 52 aggagctaactatacaacctactgcctt 79
>34676_tni-let-7b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 56 aggaggtaactatacaacctgctgcctt 83
||||| |||||||||||||| |||||||
Sbjct: 52 aggagctaactatacaacctactgcctt 79
