miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25878_gga-let-7k:mirbase
Length = 83
Score = 133 bits (67), Expect = 2e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 8 ggctgaggtagtagattgaatagttgtggagtctggtcctccctctgagctaactataca 67
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 1 ggctgaggtagtagattgaatagttgtggagtcctatcctccctttgagctaactataca 60
Query: 68 atctactgtctttcctaaggaga 90
|||||||||||||||||||||||
Sbjct: 61 atctactgtctttcctaaggaga 83
>31412_oan-let-7e:mirbase
Length = 122
Score = 119 bits (60), Expect = 4e-28
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 1 tccttgaggctgaggtagtagattgaatagttgtggagtctggtcctccctctgagctaa 60
|||||||||||||||||||||||||||||||||||| ||| | ||||||| || |||||
Sbjct: 20 tccttgaggctgaggtagtagattgaatagttgtggggtcacggcctccctgtgtgctaa 79
Query: 61 ctatacaatctactgtctttcctaaggagaca 92
||||||||||||||||||||||| ||| ||||
Sbjct: 80 ctatacaatctactgtctttcctgaggcgaca 111
>34176_dre-let-7e-1:mirbase
Length = 100
Score = 95.6 bits (48), Expect = 5e-21
Identities = 83/92 (90%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 3 cttgaggctgaggtagtagattgaatagttgtggagtc-tggtc-ctccctctgagctaa 60
|||| ||||||||||||||||||||||||||||||| | || | ||| ||||||| |||
Sbjct: 7 cttggggctgaggtagtagattgaatagttgtggagccctgcgctctctctctgagataa 66
Query: 61 ctatacaatctactgtctttcctaaggagaca 92
||||||||||||||||||||||||||| ||||
Sbjct: 67 ctatacaatctactgtctttcctaaggcgaca 98
>34177_dre-let-7e-2:mirbase
Length = 100
Score = 95.6 bits (48), Expect = 5e-21
Identities = 83/92 (90%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 3 cttgaggctgaggtagtagattgaatagttgtggagtc-tggtc-ctccctctgagctaa 60
|||| ||||||||||||||||||||||||||||||| | || | ||| ||||||| |||
Sbjct: 7 cttggggctgaggtagtagattgaatagttgtggagccctgcgctctctctctgagataa 66
Query: 61 ctatacaatctactgtctttcctaaggagaca 92
||||||||||||||||||||||||||| ||||
Sbjct: 67 ctatacaatctactgtctttcctaaggcgaca 98
>34678_tni-let-7e:mirbase
Length = 100
Score = 85.7 bits (43), Expect = 5e-18
Identities = 82/94 (87%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 1 tccttgaggctgaggtagtagattgaatagttgtggagtctggt--cctccctctgagct 58
|||||| ||||||||||||||||||||||||||||| || || |||| | |||| |
Sbjct: 5 tccttggggctgaggtagtagattgaatagttgtggggttgtgtgacctctatgtgagat 64
Query: 59 aactatacaatctactgtctttcctaaggagaca 92
|||||||||||||||||||||||| |||||||||
Sbjct: 65 aactatacaatctactgtctttcccaaggagaca 98
>34530_fru-let-7e:mirbase
Length = 100
Score = 77.8 bits (39), Expect = 1e-15
Identities = 81/94 (86%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 1 tccttgaggctgaggtagtagattgaatagttgtggagtctggt--cctccctctgagct 58
|||||| || |||||||||||||||||||||||||| || || |||| |||| |
Sbjct: 5 tccttggggttgaggtagtagattgaatagttgtggggttgtgtgacctcttagtgagat 64
Query: 59 aactatacaatctactgtctttcctaaggagaca 92
||||||||||||||||||||||||||||||||||
Sbjct: 65 aactatacaatctactgtctttcctaaggagaca 98
>31752_mmu-let-7a-1:mirbase
Length = 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcctaagg 87
||||||||||||||||||||||||||||||
Sbjct: 61 taactatacaatctactgtctttcctaagg 90
>32638_rno-let-7a-1:mirbase
Length = 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcctaagg 87
||||||||||||||||||||||||||||||
Sbjct: 61 taactatacaatctactgtctttcctaagg 90
>25868_gga-let-7a-1:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcctaa 85
||||||||||||||||||||||||||||
Sbjct: 61 taactatacaatctactgtctttcctaa 88
>33899_ssc-let-7a-2:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcctaa 85
||||||||||||||||||||||||||||
Sbjct: 59 taactatacaatctactgtctttcctaa 86
>27629_mml-let-7a-1:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttccta 84
|||||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttccta 80
>28339_hsa-let-7a-1:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttccta 84
|||||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttccta 80
>30126_ptr-let-7a-1:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttccta 84
|||||||||||||||||||||||||||
Sbjct: 53 taactatacaatctactgtctttccta 79
>30731_ppy-let-7a-1:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttccta 84
|||||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttccta 80
>33108_bta-let-7a-1:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttccta 84
|||||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttccta 80
>25680_xtr-let-7e-2:mirbase
Length = 93
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcct 83
||||||||||||||||||||||||||
Sbjct: 58 taactatacaatctactgtctttcct 83
>25870_gga-let-7a-3:mirbase
Length = 76
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcct 83
||||||||||||||||||||||||||
Sbjct: 51 taactatacaatctactgtctttcct 76
>26375_tgu-let-7a-1:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcct 83
||||||||||||||||||||||||||
Sbjct: 58 taactatacaatctactgtctttcct 83
>26930_eca-let-7a-2:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcct 83
||||||||||||||||||||||||||
Sbjct: 49 taactatacaatctactgtctttcct 74
>27631_mml-let-7a-3:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcct 83
||||||||||||||||||||||||||
Sbjct: 49 taactatacaatctactgtctttcct 74
>28341_hsa-let-7a-3:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcct 83
||||||||||||||||||||||||||
Sbjct: 49 taactatacaatctactgtctttcct 74
>30128_ptr-let-7a-3:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcct 83
||||||||||||||||||||||||||
Sbjct: 48 taactatacaatctactgtctttcct 73
>30733_ppy-let-7a-3:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcct 83
||||||||||||||||||||||||||
Sbjct: 49 taactatacaatctactgtctttcct 74
>31756_mmu-let-7c-2:mirbase
Length = 95
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcct 83
||||||||||||||||||||||||||
Sbjct: 59 taactatacaatctactgtctttcct 84
>32642_rno-let-7c-2:mirbase
Length = 95
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcct 83
||||||||||||||||||||||||||
Sbjct: 59 taactatacaatctactgtctttcct 84
>33110_bta-let-7a-3:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcct 83
||||||||||||||||||||||||||
Sbjct: 49 taactatacaatctactgtctttcct 74
>26605_cfa-let-7a-1:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||||||||||||||||||
Sbjct: 45 taactatacaatctactgtctttcc 69
>27318_mdo-let-7a-1:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttc 81
||||||||||||||||||||||||
Sbjct: 63 taactatacaatctactgtctttc 86
>26610_cfa-let-7f:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagtagattgaatagttgtgg 36
||||||||||||||| ||||||||||
Sbjct: 1 tgaggtagtagattgtatagttgtgg 26
>26934_eca-let-7f:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagtagattgaatagttgtgg 36
||||||||||||||| ||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtgg 32
>27320_mdo-let-7a-3:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 tgagctaactatacaatctactgtctttcc 82
|||| |||||||||| ||||||||||||||
Sbjct: 49 tgagataactatacagtctactgtctttcc 78
>27323_mdo-let-7f-1:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagtagattgaatagttgtgg 36
||||||||||||||| ||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtgg 32
>27636_mml-let-7f-1:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagtagattgaatagttgtgg 36
||||||||||||||| ||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtgg 32
>28346_hsa-let-7f-1:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagtagattgaatagttgtgg 36
||||||||||||||| ||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtgg 32
>30133_ptr-let-7f-1:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagtagattgaatagttgtgg 36
||||||||||||||| ||||||||||
Sbjct: 6 tgaggtagtagattgtatagttgtgg 31
>30738_ppy-let-7f-1:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagtagattgaatagttgtgg 36
||||||||||||||| ||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtgg 32
>31759_mmu-let-7f-1:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagtagattgaatagttgtgg 36
||||||||||||||| ||||||||||
Sbjct: 8 tgaggtagtagattgtatagttgtgg 33
>32645_rno-let-7f-1:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagtagattgaatagttgtgg 36
||||||||||||||| ||||||||||
Sbjct: 8 tgaggtagtagattgtatagttgtgg 33
>33101_rno-mir-3596d:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 tgaggtagtagattgaatagttgtgg 36
||||||||||||||| ||||||||||
Sbjct: 86 tgaggtagtagattgtatagttgtgg 61
>33115_bta-let-7f-1:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagtagattgaatagttgtgg 36
||||||||||||||| ||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtgg 32
>25413_pma-let-7c:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
||||||| |||||||||||||||||
Sbjct: 62 taactatgcaatctactgtctttcc 86
>27324_mdo-let-7f-2:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||| ||||||||||||||
Sbjct: 52 taactatacagtctactgtctttcc 76
>27637_mml-let-7f-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>28347_hsa-let-7f-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>30134_ptr-let-7f-2:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>30739_ppy-let-7f-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>31414_oan-let-7f-2:mirbase
Length = 130
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||| ||||||||||||||
Sbjct: 78 taactatacagtctactgtctttcc 102
>31760_mmu-let-7f-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>32646_rno-let-7f-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>33116_bta-let-7f-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>33902_ssc-let-7f:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||| ||||||||||||||
Sbjct: 55 taactatacagtctactgtctttcc 79
>34180_dre-let-7g-2:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||| ||||||||||||||
Sbjct: 61 taactatacagtctactgtctttcc 85
>34531_fru-let-7g:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||| ||||||||||||||
Sbjct: 53 taactatacagtctactgtctttcc 77
>34679_tni-let-7g:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttcc 82
|||||||||| ||||||||||||||
Sbjct: 53 taactatacagtctactgtctttcc 77
>25874_gga-let-7f:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 tgaggtagtagattgaatagttgt 34
||||||||||||||| ||||||||
Sbjct: 7 tgaggtagtagattgtatagttgt 30
>26384_tgu-let-7f:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 tgaggtagtagattgaatagttgt 34
||||||||||||||| ||||||||
Sbjct: 11 tgaggtagtagattgtatagttgt 34
>34165_dre-let-7a-1:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 taactatacaatctactgtctttc 81
||||||||||| ||||||||||||
Sbjct: 58 taactatacaacctactgtctttc 81
>34178_dre-let-7f:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 tgaggtagtagattgaatagttgt 34
||||||||||||||| ||||||||
Sbjct: 20 tgaggtagtagattgtatagttgt 43
