miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26386_tgu-let-7g-2:mirbase
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 gattccaggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gattccaggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacag 60
Query: 61 gagataactgtacaggccactgccttgcctgg 92
||||||||||||||||||||||||||||||||
Sbjct: 61 gagataactgtacaggccactgccttgcctgg 92
>26935_eca-let-7g:mirbase
Length = 88
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 5 ccaggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggaga 60
Query: 65 taactgtacaggccactgccttgcc 89
|||||||||||||||||||||||||
Sbjct: 61 taactgtacaggccactgccttgcc 85
>31761_mmu-let-7g:mirbase
Length = 88
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 5 ccaggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggaga 60
Query: 65 taactgtacaggccactgccttgcc 89
|||||||||||||||||||||||||
Sbjct: 61 taactgtacaggccactgccttgcc 85
>25875_gga-let-7g:mirbase
Length = 83
Score = 165 bits (83), Expect = 7e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 7 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 60
Query: 67 actgtacaggccactgccttgcc 89
|||||||||||||||||||||||
Sbjct: 61 actgtacaggccactgccttgcc 83
>27325_mdo-let-7g:mirbase
Length = 83
Score = 165 bits (83), Expect = 7e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 7 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 60
Query: 67 actgtacaggccactgccttgcc 89
|||||||||||||||||||||||
Sbjct: 61 actgtacaggccactgccttgcc 83
>27638_mml-let-7g:mirbase
Length = 84
Score = 165 bits (83), Expect = 7e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 7 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 60
Query: 67 actgtacaggccactgccttgcc 89
|||||||||||||||||||||||
Sbjct: 61 actgtacaggccactgccttgcc 83
>28348_hsa-let-7g:mirbase
Length = 84
Score = 165 bits (83), Expect = 7e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 7 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 60
Query: 67 actgtacaggccactgccttgcc 89
|||||||||||||||||||||||
Sbjct: 61 actgtacaggccactgccttgcc 83
>30135_ptr-let-7g:mirbase
Length = 83
Score = 165 bits (83), Expect = 7e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 7 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 60
Query: 67 actgtacaggccactgccttgcc 89
|||||||||||||||||||||||
Sbjct: 61 actgtacaggccactgccttgcc 83
>30740_ppy-let-7g:mirbase
Length = 84
Score = 165 bits (83), Expect = 7e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 7 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 60
Query: 67 actgtacaggccactgccttgcc 89
|||||||||||||||||||||||
Sbjct: 61 actgtacaggccactgccttgcc 83
>33117_bta-let-7g:mirbase
Length = 83
Score = 165 bits (83), Expect = 7e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 7 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 60
Query: 67 actgtacaggccactgccttgcc 89
|||||||||||||||||||||||
Sbjct: 61 actgtacaggccactgccttgcc 83
>33903_ssc-let-7g:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 8 ggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataa 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataa 60
Query: 68 ctgtacaggccactgccttg 87
||||||||||||||||||||
Sbjct: 61 ctgtacaggccactgccttg 80
>26611_cfa-let-7g:mirbase
Length = 79
Score = 157 bits (79), Expect = 2e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataactg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataactg 60
Query: 71 tacaggccactgccttgcc 89
|||||||||||||||||||
Sbjct: 61 tacaggccactgccttgcc 79
>31415_oan-let-7g:mirbase
Length = 91
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 4 tccaggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggag 63
|||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct: 1 tccaggctgaggtagtagtttgtacagtttcagggtctacaataccacccggtataggag 60
Query: 64 ataactgtacaggccactgccttgcc 89
||||||||||||||||||||||||||
Sbjct: 61 ataactgtacaggccactgccttgcc 86
>25682_xtr-let-7g:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 8 ggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataa 67
|||||||||||| ||||||||||||| ||||||| ||| ||||||| | ||||||||
Sbjct: 1 ggctgaggtagttgtttgtacagtttaagggtctgtgacaccaccctctgttggagataa 60
Query: 68 ctgtacaggccactgccttgcct 90
|||||||||||||||||||||||
Sbjct: 61 ctgtacaggccactgccttgcct 83
>34534_fru-let-7j:mirbase
Length = 82
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 10 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 69
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
Query: 70 gtacaggccactgccttgcc 89
||||| | |||||||||||
Sbjct: 63 gtacaagtgactgccttgcc 82
>34682_tni-let-7j:mirbase
Length = 82
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 10 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 69
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
Query: 70 gtacaggccactgccttgcc 89
||||| | |||||||||||
Sbjct: 63 gtacaagtgactgccttgcc 82
>25676_xtr-let-7a:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 tccaggctgaggtagtagtttgtacagtt 32
|||||||||||||||||| ||||| ||||
Sbjct: 7 tccaggctgaggtagtaggttgtatagtt 35
>32639_rno-let-7a-2:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 5 ccaggctgaggtagtagtttgtacagttt 33
||||||||||||||||| ||||| |||||
Sbjct: 11 ccaggctgaggtagtaggttgtatagttt 39
>33098_rno-mir-3596a:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 5 ccaggctgaggtagtagtttgtacagttt 33
||||||||||||||||| ||||| |||||
Sbjct: 94 ccaggctgaggtagtaggttgtatagttt 66
>34166_dre-let-7a-2:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 5 ccaggctgaggtagtagtttgtacagttt 33
||||||||||||||||| ||||| |||||
Sbjct: 5 ccaggctgaggtagtaggttgtatagttt 33
>34167_dre-let-7a-3:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 tgaggtagtagtttgtacagtttgagggt 39
||||||||||| ||||| |||||||||||
Sbjct: 18 tgaggtagtaggttgtatagtttgagggt 46
>34172_dre-let-7c-1:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 tccaggctgaggtagtagtttgta 27
|||||||||||||||||| |||||
Sbjct: 16 tccaggctgaggtagtaggttgta 39
>34173_dre-let-7c-2:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 tccaggctgaggtagtagtttgta 27
|||||||||||||||||| |||||
Sbjct: 8 tccaggctgaggtagtaggttgta 31
>34179_dre-let-7g-1:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 tgaggtagtagtttgtacagtttg 34
||||||||||||||||| ||||||
Sbjct: 14 tgaggtagtagtttgtatagtttg 37
>34183_dre-let-7j:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 tgaggtagtagtttgtacagtttg-agggtctatgataccacccggtacaggagataact 69
||||||||| ||||||||||||| ||||||| | || | ||| || ||||| |||||
Sbjct: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
Query: 70 gtacaggccactgccttgcc 89
|||||| | |||||||||||
Sbjct: 64 gtacagactactgccttgcc 83
