miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25894_gga-mir-16-1:mirbase
Length = 84
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 1 tgtcatactttagcagcacgtaaatattggtgttaagactgtaaatatctccagtattaa 60
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4 tgtcatactctagcagcacgtaaatattggtgttaaaactgtaaatatctccagtattaa 63
Query: 61 ctgtgctgctgaagtaaggct 81
|||||||||||||||||||||
Sbjct: 64 ctgtgctgctgaagtaaggct 84
>33130_bta-mir-16a:mirbase
Length = 89
Score = 105 bits (53), Expect = 5e-24
Identities = 68/72 (94%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattggtgttaagattctaaaattatctccagtattaactgtgct 72
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 73 gctgaagtaagg 84
>31428_oan-mir-16a:mirbase
Length = 132
Score = 101 bits (51), Expect = 8e-23
Identities = 69/74 (93%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||||||
Sbjct: 28 ttagcagcacgtaaatattggcgttaagactctaaaagtatctccagtattgactgtgct 87
Query: 68 gctgaagtaaggct 81
||||||||||||||
Sbjct: 88 gctgaagtaaggct 101
>27334_mdo-mir-16:mirbase
Length = 90
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattggcgttaagattttaaaagtatctccagtattaactgtgct 72
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 73 gctgaagtaagg 84
>27480_age-mir-16:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgct 72
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 73 gctgaagtaagg 84
>27589_sla-mir-16:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgct 72
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 73 gctgaagtaagg 84
>27652_mml-mir-16-1:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgct 72
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 73 gctgaagtaagg 84
>28172_mne-mir-16:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgct 72
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 73 gctgaagtaagg 84
>28260_ggo-mir-16:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgct 72
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 73 gctgaagtaagg 84
>28362_hsa-mir-16-1:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgct 72
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 73 gctgaagtaagg 84
>30044_ppa-mir-16:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgct 72
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 73 gctgaagtaagg 84
>30148_ptr-mir-16-1:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgct 72
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 73 gctgaagtaagg 84
>30753_ppy-mir-16:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgct 72
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 73 gctgaagtaagg 84
>33914_ssc-mir-16-2:mirbase
Length = 79
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||
Sbjct: 8 ttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgct 67
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 68 gctgaagtaagg 79
>27541_lla-mir-16:mirbase
Length = 89
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/72 (91%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| | ||||| | |||| ||||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattggcgctaagattctaaaattatctccagtattaactgtgct 72
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 73 gctgaagtaagg 84
>26625_cfa-mir-16-1:mirbase
Length = 65
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/65 (92%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgctg 68
|||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 60
Query: 69 ctgaa 73
|||||
Sbjct: 61 ctgaa 65
>31777_mmu-mir-16-1:mirbase
Length = 93
Score = 81.8 bits (41), Expect = 8e-17
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaaga--ctgtaaatatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||| ||| || || |||||||||| ||||||||
Sbjct: 15 ttagcagcacgtaaatattggcgttaagattctgaaattacctccagtattgactgtgct 74
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 75 gctgaagtaagg 86
>26948_eca-mir-16-2:mirbase
Length = 63
Score = 79.8 bits (40), Expect = 3e-16
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgctg 68
|||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 60
Query: 69 ctg 71
|||
Sbjct: 61 ctg 63
>25700_xtr-mir-16a:mirbase
Length = 82
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 8 ctttagcagcacgtaaatattggtgttaa 36
|||||||||||||||||||||||||||||
Sbjct: 11 ctttagcagcacgtaaatattggtgttaa 39
>31394_lca-mir-16:mirbase
Length = 74
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaaga 38
|||||||||||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattggtgttaaga 41
>34206_dre-mir-16a:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 ctttagcagcacgtaaatattggtgt 33
||||||||||||||||||||||||||
Sbjct: 10 ctttagcagcacgtaaatattggtgt 35
>25895_gga-mir-16-2:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggtgt 33
|||||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattggtgt 39
>31429_oan-mir-16b:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggtgt 33
|||||||||||||||||||||||
Sbjct: 21 tagcagcacgtaaatattggtgt 43
>34547_fru-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggtgttaag 37
|||||||||||||||||||| ||||||
Sbjct: 13 tagcagcacgtaaatattggagttaag 39
>34695_tni-mir-16:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggtgttaag 37
|||||||||||||||||||| ||||||
Sbjct: 1 tagcagcacgtaaatattggagttaag 27
>25701_xtr-mir-16b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattgg 30
|||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattgg 33
>25429_pma-mir-16:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattgg 30
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>26400_tgu-mir-16b:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattgg 30
||||||||||||||||||||
Sbjct: 11 tagcagcacgtaaatattgg 30
>26626_cfa-mir-16-2:mirbase
Length = 65
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattgg 30
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
>26947_eca-mir-16:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattgg 30
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>27653_mml-mir-16-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattgg 30
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>28363_hsa-mir-16-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattgg 30
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>30149_ptr-mir-16-2:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattgg 30
||||||||||||||||||||
Sbjct: 9 tagcagcacgtaaatattgg 28
>30754_ppy-mir-16-2:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattgg 30
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>31778_mmu-mir-16-2:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattgg 30
||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattgg 36
>32659_rno-mir-16:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattgg 30
||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattgg 36
>33131_bta-mir-16b:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattgg 30
||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattgg 36
>33913_ssc-mir-16-1:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattgg 30
||||||||||||||||||||
Sbjct: 8 tagcagcacgtaaatattgg 27
>34207_dre-mir-16b:mirbase
Length = 140
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattgg 30
||||||||||||||||||||
Sbjct: 39 tagcagcacgtaaatattgg 58
>34208_dre-mir-16c:mirbase
Length = 136
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 8 ctttagcagcacgtaaatattggtgtta 35
||||||||||| ||||||||||| ||||
Sbjct: 32 ctttagcagcatgtaaatattggagtta 59
