miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25899_gga-mir-18a:mirbase
Length = 93
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 ctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcccta 63
Query: 61 agtgctccttct 72
||||||||||||
Sbjct: 64 agtgctccttct 75
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 ctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcccta 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ctttttgtcctaaggtgcatctagtgcagatagtgaagtagattagcatctactgcccta 63
Query: 61 agtgctccttct 72
||||||||||||
Sbjct: 64 agtgctccttct 75
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 ctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcccta 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ctttttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgcccta 63
Query: 61 agtgctccttct 72
||||||||||||
Sbjct: 64 agtgctccttct 75
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 ctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcccta 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ctttttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgcccta 63
Query: 61 agtgctccttct 72
||||||||||||
Sbjct: 64 agtgctccttct 75
>27337_mdo-mir-18:mirbase
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 5 ttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 64
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 60
Query: 65 ctccttct 72
||||||||
Sbjct: 61 ctccttct 68
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 1 ctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcccta 60
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7 ctttttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgcccta 66
Query: 61 agtgctccttct 72
||||||||||||
Sbjct: 67 agtgctccttct 78
>32664_rno-mir-18a:mirbase
Length = 96
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 1 ctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcccta 60
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7 ctttttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgcccta 66
Query: 61 agtgctccttct 72
||||||||||||
Sbjct: 67 agtgctccttct 78
>27483_age-mir-18:mirbase
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tct 72
|||
Sbjct: 65 tct 67
>27544_lla-mir-18:mirbase
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tct 72
|||
Sbjct: 65 tct 67
>27592_sla-mir-18:mirbase
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tct 72
|||
Sbjct: 65 tct 67
>27656_mml-mir-18:mirbase
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tct 72
|||
Sbjct: 65 tct 67
>28175_mne-mir-18:mirbase
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tct 72
|||
Sbjct: 65 tct 67
>28263_ggo-mir-18:mirbase
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tct 72
|||
Sbjct: 65 tct 67
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tct 72
|||
Sbjct: 65 tct 67
>30047_ppa-mir-18:mirbase
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tct 72
|||
Sbjct: 65 tct 67
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tct 72
|||
Sbjct: 65 tct 67
>30757_ppy-mir-18:mirbase
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tct 72
|||
Sbjct: 65 tct 67
>31397_lca-mir-18:mirbase
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tct 72
|||
Sbjct: 65 tct 67
>33134_bta-mir-18a:mirbase
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tct 72
|||
Sbjct: 65 tct 67
>26950_eca-mir-18a:mirbase
Length = 61
Score = 121 bits (61), Expect = 7e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 60
Query: 71 c 71
|
Sbjct: 61 c 61
>34211_dre-mir-18a:mirbase
Length = 83
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 4 tttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagt 63
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 4 tttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagt 63
Query: 64 gctccttct 72
|||||||||
Sbjct: 64 gctccttct 72
>34550_fru-mir-18:mirbase
Length = 76
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 5 ttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 64
|||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 65 ctccttct 72
||||||||
Sbjct: 61 ctccttct 68
>34698_tni-mir-18:mirbase
Length = 76
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 5 ttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 64
|||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 65 ctccttct 72
||||||||
Sbjct: 61 ctccttct 68
>31432_oan-mir-18:mirbase
Length = 130
Score = 91.7 bits (46), Expect = 6e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
||||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||
Sbjct: 29 taaggtgcatctagtgcagttagtgaagtagcttagaatctactgccctaaatgctcctt 88
Query: 71 ct 72
||
Sbjct: 89 ct 90
>34212_dre-mir-18b:mirbase
Length = 87
Score = 85.7 bits (43), Expect = 4e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
Query: 70 tct 72
|||
Sbjct: 72 tct 74
>25900_gga-mir-18b:mirbase
Length = 84
Score = 75.8 bits (38), Expect = 4e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 15 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 74
Query: 71 ct 72
||
Sbjct: 75 ct 76
>27657_mml-mir-18b:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 71 ct 72
||
Sbjct: 66 ct 67
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 71 ct 72
||
Sbjct: 66 ct 67
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 71 ct 72
||
Sbjct: 66 ct 67
>33135_bta-mir-18b:mirbase
Length = 75
Score = 75.8 bits (38), Expect = 4e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
Query: 71 ct 72
||
Sbjct: 68 ct 69
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 75.8 bits (38), Expect = 4e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| ||||
Sbjct: 11 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 70
Query: 71 ct 72
||
Sbjct: 71 ct 72
>25656_xla-mir-18:mirbase
Length = 79
Score = 71.9 bits (36), Expect = 6e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 71.9 bits (36), Expect = 6e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 9 taaggtgcatctagtgcagttagtgacatagtgtagcatctactgccctaaatgctcctt 68
>26951_eca-mir-18b:mirbase
Length = 59
Score = 69.9 bits (35), Expect = 2e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaa 61
||||||||||||||||||| |||||||| || |||| ||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaa 51
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 69.9 bits (35), Expect = 2e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaa 61
||||||||||||||||||| |||||||| || |||| ||||||||||||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaa 56
>31781_mmu-mir-18b:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
||||||||||||||||| | |||||||| || ||| |||||||||||||| ||| ||||
Sbjct: 11 taaggtgcatctagtgctgttagtgaagcagcttacaatctactgccctaaatgcccctt 70
Query: 71 ct 72
||
Sbjct: 71 ct 72
>26629_cfa-mir-18b:mirbase
Length = 77
Score = 58.0 bits (29), Expect = 8e-10
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
Query: 71 c 71
|
Sbjct: 68 c 68
>25433_pma-mir-18a:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 ttgtactaaggtgcatctagtgcagatagt 34
|||| |||||||||||||||||||||||||
Sbjct: 12 ttgtgctaaggtgcatctagtgcagatagt 41
>26405_tgu-mir-18b:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtag 41
||||||||||||||||||| |||||| ||||
Sbjct: 101 taaggtgcatctagtgcagttagtgatgtag 131
>34213_dre-mir-18c:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
>25434_pma-mir-18b:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aaggtgcatctagtgcagatagtg 35
||||||||| ||||||||||||||
Sbjct: 16 aaggtgcatttagtgcagatagtg 39
