miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25900_gga-mir-18b:mirbase
Length = 84
Score = 77.8 bits (39), Expect = 2e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 90 ggtccttgtgttaaggtgcatctagtgcagttagtgatgtagc 132
||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4 ggtccttgtgttaaggtgcatctagtgcagttagtgacgtagc 46
>31432_oan-mir-18:mirbase
Length = 130
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 93 ccttgtgttaaggtgcatctagtgcagttagtgatgtagc 132
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 21 ccttgtgttaaggtgcatctagtgcagttagtgaagtagc 60
>25656_xla-mir-18:mirbase
Length = 79
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 93 ccttgtgttaaggtgcatctagtgcagttagtga 126
||||||||||||||||||||||||||||||||||
Sbjct: 1 ccttgtgttaaggtgcatctagtgcagttagtga 34
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 93 ccttgtgttaaggtgcatctagtgcagttagtga 126
||||||||||||||||||||||||||||||||||
Sbjct: 1 ccttgtgttaaggtgcatctagtgcagttagtga 34
>33135_bta-mir-18b:mirbase
Length = 75
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 94 cttgtgttaaggtgcatctagtgcagttagtga 126
|||||||||||||||||||||||||||||||||
Sbjct: 1 cttgtgttaaggtgcatctagtgcagttagtga 33
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 94 cttgtgttaaggtgcatctagtgcagttagtga 126
|||||||||||||||||||||||||||||||||
Sbjct: 4 cttgtgttaaggtgcatctagtgcagttagtga 36
>26629_cfa-mir-18b:mirbase
Length = 77
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 96 tgtgttaaggtgcatctagtgcagttagtga 126
|||||||||||||||||||||||||||||||
Sbjct: 3 tgtgttaaggtgcatctagtgcagttagtga 33
>27657_mml-mir-18b:mirbase
Length = 71
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 96 tgtgttaaggtgcatctagtgcagttagtga 126
|||||||||||||||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtga 31
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 96 tgtgttaaggtgcatctagtgcagttagtga 126
|||||||||||||||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtga 31
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 96 tgtgttaaggtgcatctagtgcagttagtga 126
|||||||||||||||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtga 31
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 96 tgtgttaaggtgcatctagtgcagttagtga 126
|||||||||||||||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtga 31
>31781_mmu-mir-18b:mirbase
Length = 83
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 94 cttgtgttaaggtgcatctagtgcagttagtga 126
|||||||||||||||||||||||| ||||||||
Sbjct: 4 cttgtgttaaggtgcatctagtgctgttagtga 36
>26951_eca-mir-18b:mirbase
Length = 59
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtga 126
||||||||||||||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagttagtga 26
>34211_dre-mir-18a:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 95 ttgtgttaaggtgcatctagtgcagttagtgatgtag 131
||||| ||||||||||||||||||| |||||| ||||
Sbjct: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtag 41
>34550_fru-mir-18:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 95 ttgtgttaaggtgcatctagtgcagttagtga 126
||||| ||||||||||||||||||| ||||||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtga 32
>34698_tni-mir-18:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 95 ttgtgttaaggtgcatctagtgcagttagtga 126
||||| ||||||||||||||||||| ||||||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtga 32
>25433_pma-mir-18a:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 94 cttgtgttaaggtgcatctagtgcagttagt 124
|||||| ||||||||||||||||||| ||||
Sbjct: 11 cttgtgctaaggtgcatctagtgcagatagt 41
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtag 44
>25899_gga-mir-18a:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtag 44
>26404_tgu-mir-18a:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 11 taaggtgcatctagtgcagatagtgaagtag 41
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtag 44
>26950_eca-mir-18a:mirbase
Length = 61
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 1 taaggtgcatctagtgcagatagtgaagtag 31
>27337_mdo-mir-18:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 7 taaggtgcatctagtgcagatagtgaagtag 37
>27483_age-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtag 36
>27544_lla-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtag 36
>27592_sla-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtag 36
>27656_mml-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtag 36
>28175_mne-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtag 36
>28263_ggo-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtag 36
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtag 36
>30047_ppa-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtag 36
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtag 36
>30757_ppy-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtag 36
>31397_lca-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtag 36
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 17 taaggtgcatctagtgcagatagtgaagtag 47
>32664_rno-mir-18a:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 17 taaggtgcatctagtgcagatagtgaagtag 47
>33134_bta-mir-18a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtag 36
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 taaggtgcatctagtgcagttagtgatgtag 131
||||||||||||||||||| |||||| ||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtag 44
