miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25905_gga-mir-21:mirbase
Length = 97
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 tcctgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tcctgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcg 67
Query: 61 gtaggctgtctg 72
||||||||||||
Sbjct: 68 gtaggctgtctg 79
>27341_mdo-mir-21:mirbase
Length = 74
Score = 105 bits (53), Expect = 4e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacagcagtcg 57
>31787_mmu-mir-21:mirbase
Length = 92
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 11 tgtcggatagcttatcagactgatgttgactgttgaatctcatggcaacagcagtcgatg 70
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 71 ggctgtctg 79
>26957_eca-mir-21:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacagcagtcgatg 60
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 61 ggctgtctg 69
>27488_age-mir-21:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 61 ggctgtctg 69
>27663_mml-mir-21:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 61 ggctgtctg 69
>28180_mne-mir-21:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 61 ggctgtctg 69
>28268_ggo-mir-21:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 61 ggctgtctg 69
>28372_hsa-mir-21:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 61 ggctgtctg 69
>30052_ppa-mir-21:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 61 ggctgtctg 69
>30159_ptr-mir-21:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 61 ggctgtctg 69
>30764_ppy-mir-21:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 61 ggctgtctg 69
>31751_cgr-mir-21:mirbase
Length = 92
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 11 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacagcagtcgatg 70
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 71 ggctgtctg 79
>32671_rno-mir-21:mirbase
Length = 92
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 11 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacagcagtcgatg 70
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 71 ggctgtctg 79
>33141_bta-mir-21:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacagcagtcgatg 60
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 61 ggctgtctg 69
>33923_ssc-mir-21:mirbase
Length = 92
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 11 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacagcagtcgatg 70
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 71 ggctgtctg 79
>31438_oan-mir-21:mirbase
Length = 114
Score = 95.6 bits (48), Expect = 4e-21
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1 tcctgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcg 60
|||| |||||||||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 19 tcctatcggatagcttatcagactgatgttgactgttagatctcctggcaacagcagtcg 78
Query: 61 gtaggctgtctg 72
| |||||||||
Sbjct: 79 atgggctgtctg 90
>26635_cfa-mir-21:mirbase
Length = 60
Score = 87.7 bits (44), Expect = 9e-19
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 11 tagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggtaggctgtc 70
|||||||||||||||||||||||||||| |||||||||||||| |||||| | |||||||
Sbjct: 1 tagcttatcagactgatgttgactgttgaatctcatggcaacagcagtcgatgggctgtc 60
>34554_fru-mir-21:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 8e-07
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 10 atagcttatcagactgatgttgactgtt-ggatctcatggcaacaacagtcggtaggctg 68
|||||||||||||||| ||||| ||||| ||| || ||| ||||||||| ||||||||
Sbjct: 7 atagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctgtaggctg 66
Query: 69 tctg 72
||||
Sbjct: 67 tctg 70
>34220_dre-mir-21-1:mirbase
Length = 148
Score = 44.1 bits (22), Expect = 1e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgtt 37
|||| ||||||||||||||||| ||||| |||||
Sbjct: 42 tgtcagatagcttatcagactggtgttggctgtt 75
>34702_tni-mir-21:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 atagcttatcagactgatgttgactgtt 37
|||||||||||||||| ||||| |||||
Sbjct: 38 atagcttatcagactggtgttggctgtt 65
