miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33927_ssc-mir-23b:mirbase
Length = 80
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 2 ttgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattacc 61
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattacc 70
Query: 62 acgcagcca 70
|||||||||
Sbjct: 71 acgcagcca 79
>26960_eca-mir-23b:mirbase
Length = 74
Score = 121 bits (61), Expect = 7e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 2 ttgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattacc 61
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattacc 66
Query: 62 acgca 66
|||||
Sbjct: 67 acgca 71
>27666_mml-mir-23b:mirbase
Length = 97
Score = 121 bits (61), Expect = 7e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 2 ttgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattacc 61
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 ttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattacc 78
Query: 62 acgca 66
|||||
Sbjct: 79 acgca 83
>28375_hsa-mir-23b:mirbase
Length = 97
Score = 121 bits (61), Expect = 7e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 2 ttgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattacc 61
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 ttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattacc 78
Query: 62 acgca 66
|||||
Sbjct: 79 acgca 83
>30055_ppa-mir-23b:mirbase
Length = 97
Score = 121 bits (61), Expect = 7e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 2 ttgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattacc 61
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 ttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattacc 78
Query: 62 acgca 66
|||||
Sbjct: 79 acgca 83
>30162_ptr-mir-23b:mirbase
Length = 97
Score = 121 bits (61), Expect = 7e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 2 ttgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattacc 61
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 ttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattacc 78
Query: 62 acgca 66
|||||
Sbjct: 79 acgca 83
>30767_ppy-mir-23b:mirbase
Length = 97
Score = 121 bits (61), Expect = 7e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 2 ttgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattacc 61
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 ttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattacc 78
Query: 62 acgca 66
|||||
Sbjct: 79 acgca 83
>27344_mdo-mir-23b:mirbase
Length = 74
Score = 119 bits (60), Expect = 3e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 2 ttgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattacc 61
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7 ttgggttcctggcatgctgatttgtgacttaagatgaaaatcacattgccagggattacc 66
Query: 62 acgcagcc 69
||||||||
Sbjct: 67 acgcagcc 74
>25907_gga-mir-23b:mirbase
Length = 86
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 1 tttgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattac 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 12 tttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggattac 71
Query: 61 cac 63
|||
Sbjct: 72 cac 74
>32674_rno-mir-23b:mirbase
Length = 97
Score = 115 bits (58), Expect = 4e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 2 ttgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattacc 61
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 19 ttgggttcctggcatgctgatttgtgacttgagattaaaatcacattgccagggattacc 78
Query: 62 acgcagccat 71
||||| ||||
Sbjct: 79 acgcaaccat 88
>31790_mmu-mir-23b:mirbase
Length = 74
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 2 ttgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattacc 61
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7 ttgggttcctggcatgctgatttgtgacttgagattaaaatcacattgccagggattacc 66
Query: 62 acgca 66
|||||
Sbjct: 67 acgca 71
>33145_bta-mir-23b:mirbase
Length = 60
Score = 111 bits (56), Expect = 6e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 4 gggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattaccac 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 60
>33146_bta-mir-23b:mirbase
Length = 60
Score = 111 bits (56), Expect = 6e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 4 gggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattaccac 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 60
>25715_xtr-mir-23b:mirbase
Length = 88
Score = 109 bits (55), Expect = 3e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 1 tttgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattac 60
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 13 tttgggttcctggcatgctgatttgtgagttaagattaaaatcacattgccagggattac 72
Query: 61 cac 63
|||
Sbjct: 73 cac 75
>26638_cfa-mir-23b:mirbase
Length = 54
Score = 99.6 bits (50), Expect = 2e-22
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 6 gttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggatta 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggatta 54
>31441_oan-mir-23b:mirbase
Length = 109
Score = 95.6 bits (48), Expect = 4e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 3 tgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattacca 62
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 25 tgggttcctggcatgctgatttgtgacttaagagaaaaatcacattgccagggataacca 84
Query: 63 cgca 66
||||
Sbjct: 85 cgca 88
>34560_fru-mir-23b:mirbase
Length = 73
Score = 83.8 bits (42), Expect = 1e-17
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 4 gggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattaccac 63
||||||||||| || |||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 9 gggttcctggcgtgctgatttgtgacttatgat-aaaatcacattgccagggattaccac 67
Query: 64 gcagcc 69
|||||
Sbjct: 68 acagcc 73
>34708_tni-mir-23b:mirbase
Length = 73
Score = 71.9 bits (36), Expect = 6e-14
Identities = 55/60 (91%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 4 gggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattaccac 63
||||||||||| || ||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
>25443_pma-mir-23b:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 aaaatcacattgccagggattaccac 63
||||||||||||||||||||||||||
Sbjct: 51 aaaatcacattgccagggattaccac 76
>34227_dre-mir-23b:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 aaaatcacattgccagggattaccac 63
||||||||||||||||||||||||||
Sbjct: 48 aaaatcacattgccagggattaccac 73
>25442_pma-mir-23a:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 38 aaaatcacattgccagggattacc 61
||||||||||||||||||||||||
Sbjct: 47 aaaatcacattgccagggattacc 70
>34224_dre-mir-23a-1:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 aaaatcacattgccagggattaccac 63
||||||||||||||||||||| ||||
Sbjct: 53 aaaatcacattgccagggatttccac 78
>34226_dre-mir-23a-3:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 37 taaaatcacattgccagggatt 58
||||||||||||||||||||||
Sbjct: 44 taaaatcacattgccagggatt 65
>34557_fru-mir-23a-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 aaaatcacattgccagggattaccac 63
||||||||||||||||||||| ||||
Sbjct: 53 aaaatcacattgccagggatttccac 78
>34705_tni-mir-23a-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 aaaatcacattgccagggattaccac 63
||||||||||||||||||||| ||||
Sbjct: 53 aaaatcacattgccagggatttccac 78
>25714_xtr-mir-23a-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 38 aaaatcacattgccagggatt 58
|||||||||||||||||||||
Sbjct: 49 aaaatcacattgccagggatt 69
>31440_oan-mir-23a:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 38 aaaatcacattgccagggatt 58
|||||||||||||||||||||
Sbjct: 50 aaaatcacattgccagggatt 70
>25659_xla-mir-23a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatt 68
>25713_xtr-mir-23a-1:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatt 68
>26637_cfa-mir-23a:mirbase
Length = 52
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 32 aaatcacattgccagggatt 51
>26959_eca-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>27343_mdo-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 40 aaatcacattgccagggatt 59
>27490_age-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>27598_sla-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>27665_mml-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>28182_mne-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>28269_ggo-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>28374_hsa-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>30054_ppa-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>30161_ptr-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>30766_ppy-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>31403_lca-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>31789_mmu-mir-23a:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatt 63
>32673_rno-mir-23a:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatt 63
>33144_bta-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>33926_ssc-mir-23a:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 40 aaatcacattgccagggatt 59
>34558_fru-mir-23a-2:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 46 aaatcacattgccagggatt 65
>34706_tni-mir-23a-2:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 aaatcacattgccagggatt 58
||||||||||||||||||||
Sbjct: 46 aaatcacattgccagggatt 65
>34225_dre-mir-23a-2:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 40 aatcacattgccagggatt 58
|||||||||||||||||||
Sbjct: 56 aatcacattgccagggatt 74
>34559_fru-mir-23a-3:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 40 aatcacattgccagggatt 58
|||||||||||||||||||
Sbjct: 52 aatcacattgccagggatt 70
>34707_tni-mir-23a-3:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 40 aatcacattgccagggatt 58
|||||||||||||||||||
Sbjct: 53 aatcacattgccagggatt 71
