miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26421_tgu-mir-30a:mirbase
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 ttggggcagtcagtgcctctgtaaacatccttgactggaagctggaagggctggaaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggggcagtcagtgcctctgtaaacatccttgactggaagctggaagggctggaaggag 60
Query: 61 ctttcagtcggatgtttacagcagcaggctgc 92
||||||||||||||||||||||||||||||||
Sbjct: 61 ctttcagtcggatgtttacagcagcaggctgc 92
>31454_oan-mir-30e:mirbase
Length = 95
Score = 107 bits (54), Expect = 1e-24
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctggaagggctggaaggagctttcagtcggatgttta 78
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 15 ctgtaaacatccttgactggaagctggaaggtgccgaaggagctttcagtcggatgttta 74
Query: 79 cagcagcaggctgc 92
|||| |||||||||
Sbjct: 75 cagcggcaggctgc 88
>33169_bta-mir-30e:mirbase
Length = 92
Score = 101 bits (51), Expect = 8e-23
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctggaagg-gctggaaggagctttcagtcggatgttt 77
|||||||||||||||||||||||||| |||| | || |||||||||||||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgtaaggcgttgcaaggagctttcagtcggatgttt 75
Query: 78 acagcagcaggctgc 92
||||| |||||||||
Sbjct: 76 acagcggcaggctgc 90
>31811_mmu-mir-30e:mirbase
Length = 92
Score = 93.7 bits (47), Expect = 2e-20
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctggaagggctgga-aggagctttcagtcggatgttt 77
|||||||||||||||||||||||||| |||| | || ||||||||||||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgtaaggtgttgagaggagctttcagtcggatgttt 75
Query: 78 acagcagcaggctgc 92
||||| |||||||||
Sbjct: 76 acagcggcaggctgc 90
>32693_rno-mir-30e:mirbase
Length = 92
Score = 93.7 bits (47), Expect = 2e-20
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctggaagggctgga-aggagctttcagtcggatgttt 77
|||||||||||||||||||||||||| |||| | || ||||||||||||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgtaaggtgttgagaggagctttcagtcggatgttt 75
Query: 78 acagcagcaggctgc 92
||||| |||||||||
Sbjct: 76 acagcggcaggctgc 90
>26979_eca-mir-30e:mirbase
Length = 92
Score = 85.7 bits (43), Expect = 5e-18
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctggaagggctgga-aggagctttcagtcggatgttt 77
|||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgtaaggtgttcagaggagctttcagtcggatgttt 75
Query: 78 acagcagcaggctgc 92
||||| |||||||||
Sbjct: 76 acagcggcaggctgc 90
>27686_mml-mir-30e:mirbase
Length = 92
Score = 85.7 bits (43), Expect = 5e-18
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctggaagggctgga-aggagctttcagtcggatgttt 77
|||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgtaaggtgttcagaggagctttcagtcggatgttt 75
Query: 78 acagcagcaggctgc 92
||||| |||||||||
Sbjct: 76 acagcggcaggctgc 90
>28396_hsa-mir-30e:mirbase
Length = 92
Score = 85.7 bits (43), Expect = 5e-18
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctggaagggctgga-aggagctttcagtcggatgttt 77
|||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgtaaggtgttcagaggagctttcagtcggatgttt 75
Query: 78 acagcagcaggctgc 92
||||| |||||||||
Sbjct: 76 acagcggcaggctgc 90
>30182_ptr-mir-30e:mirbase
Length = 91
Score = 85.7 bits (43), Expect = 5e-18
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctggaagggctgga-aggagctttcagtcggatgttt 77
|||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||
Sbjct: 15 ctgtaaacatccttgactggaagctgtaaggtgttcagaggagctttcagtcggatgttt 74
Query: 78 acagcagcaggctgc 92
||||| |||||||||
Sbjct: 75 acagcggcaggctgc 89
>30786_ppy-mir-30e:mirbase
Length = 92
Score = 85.7 bits (43), Expect = 5e-18
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctggaagggctgga-aggagctttcagtcggatgttt 77
|||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgtaaggtgttcagaggagctttcagtcggatgttt 75
Query: 78 acagcagcaggctgc 92
||||| |||||||||
Sbjct: 76 acagcggcaggctgc 90
>33945_ssc-mir-30e:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 5e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 14 tgcctctgtaaacatccttgactggaagctggaagg-gctggaaggagctttcagtcgga 72
|||| |||||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 3 tgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcgga 62
Query: 73 tgtttacagcagcaggct 90
|||||||||| |||||||
Sbjct: 63 tgtttacagcggcaggct 80
>33946_ssc-mir-30e:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 5e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 14 tgcctctgtaaacatccttgactggaagctggaagg-gctggaaggagctttcagtcgga 72
|||| |||||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 3 tgccactgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcgga 62
Query: 73 tgtttacagcagcaggct 90
|||||||||| |||||||
Sbjct: 63 tgtttacagcggcaggct 80
>26658_cfa-mir-30e:mirbase
Length = 64
Score = 71.9 bits (36), Expect = 8e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 20 tgtaaacatccttgactggaagctggaagg-gctggaaggagctttcagtcggatgttta 78
||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtaaggtgctcagaggggctttcagtcggatgttta 60
Query: 79 cagc 82
||||
Sbjct: 61 cagc 64
>25737_xtr-mir-30e:mirbase
Length = 90
Score = 65.9 bits (33), Expect = 5e-12
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 15 gcctctgtaaacatccttgactggaagctg-gaagggctggaaggagctttcagtcggat 73
|||||||||||||||||||||||||||||| ||| || || |||||||||||||||
Sbjct: 12 gcctctgtaaacatccttgactggaagctgtgaaataatgatagtagctttcagtcggat 71
Query: 74 gtttacagc 82
|||||||||
Sbjct: 72 gtttacagc 80
>25921_gga-mir-30e:mirbase
Length = 96
Score = 61.9 bits (31), Expect = 7e-11
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctggaagggctg-gaaggagctttcagtcggatgttt 77
|||||||||||||||||||||||||| ||| | | || ||||||||||||||||||
Sbjct: 18 ctgtaaacatccttgactggaagctgtgaggtgtcagcgggggctttcagtcggatgttt 77
Query: 78 acagcagcaggctgc 92
||||| |||||||||
Sbjct: 78 acagctgcaggctgc 92
>34251_dre-mir-30e-2:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 7e-11
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctggaagggctggaaggagctttcagtcggatgttta 78
||||||||||||||||||||||||||| | | || |||||||||||||||||||||
Sbjct: 10 ctgtaaacatccttgactggaagctgg-tgcacatgatggagctttcagtcggatgtttg 68
Query: 79 cagcagc 85
|||||||
Sbjct: 69 cagcagc 75
>25456_pma-mir-30b:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctgg 45
|||||||||||| ||||||||||||||
Sbjct: 16 ctgtaaacatccctgactggaagctgg 42
>25731_xtr-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>25732_xtr-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>25915_gga-mir-30a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>25916_gga-mir-30a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>26423_tgu-mir-30b:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 10 ctgtaaacatcctcgactggaagctg 35
>26424_tgu-mir-30b:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 10 ctgtaaacatcctcgactggaagctg 35
>27356_mdo-mir-30a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>27680_mml-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>27681_mml-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>28278_ggo-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>28279_ggo-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>28391_hsa-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>30066_ppa-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>30065_ppa-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>30176_ptr-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>30177_ptr-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>30781_ppy-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>30782_ppy-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>31450_oan-mir-30a:mirbase
Length = 137
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 30 ctgtaaacatcctcgactggaagctg 55
>31806_mmu-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>32687_rno-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>33164_bta-mir-30a:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 1 ctgtaaacatcctcgactggaagctg 26
>33938_ssc-mir-30a:mirbase
Length = 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 20 ctgtaaacatcctcgactggaagctg 45
>33939_ssc-mir-30a:mirbase
Length = 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctgtaaacatccttgactggaagctg 44
||||||||||||| ||||||||||||
Sbjct: 20 ctgtaaacatcctcgactggaagctg 45
>25455_pma-mir-30a:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 tctgtaaacatccttgactggaagc 42
|||||||||||||| ||||||||||
Sbjct: 7 tctgtaaacatcctcgactggaagc 31
>26653_cfa-mir-30a:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 tgtaaacatccttgactggaagctg 44
|||||||||||| ||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctg 25
>26657_cfa-mir-30d:mirbase
Length = 60
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 20 tgtaaacatccttgactggaagctggaag 48
||||||||||| ||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctggaag 29
