miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26426_tgu-mir-30c:mirbase
Length = 72
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
Query: 61 ctctctgccttg 72
||||||||||||
Sbjct: 61 ctctctgccttg 72
>33943_ssc-mir-30c-2:mirbase
Length = 80
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 69
Query: 61 ctctctgcctt 71
|||||||||||
Sbjct: 70 ctctctgcctt 80
>25919_gga-mir-30c-2:mirbase
Length = 72
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 66
Query: 61 ctc 63
|||
Sbjct: 67 ctc 69
>31809_mmu-mir-30c-2:mirbase
Length = 84
Score = 125 bits (63), Expect = 4e-30
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctgtttact 73
Query: 61 ctctctgcctt 71
|||||||||||
Sbjct: 74 ctctctgcctt 84
>32691_rno-mir-30c-2:mirbase
Length = 84
Score = 125 bits (63), Expect = 4e-30
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctgtttact 73
Query: 61 ctctctgcctt 71
|||||||||||
Sbjct: 74 ctctctgcctt 84
>27684_mml-mir-30c-2:mirbase
Length = 72
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 66
Query: 61 ctctct 66
||||||
Sbjct: 67 ctctct 72
>26656_cfa-mir-30c-2:mirbase
Length = 62
Score = 115 bits (58), Expect = 4e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 60
Query: 61 ct 62
||
Sbjct: 61 ct 62
>27556_lla-mir-30c:mirbase
Length = 72
Score = 115 bits (58), Expect = 4e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 66
Query: 61 ct 62
||
Sbjct: 67 ct 68
>28192_mne-mir-30c:mirbase
Length = 72
Score = 115 bits (58), Expect = 4e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 66
Query: 61 ct 62
||
Sbjct: 67 ct 68
>28394_hsa-mir-30c-2:mirbase
Length = 72
Score = 115 bits (58), Expect = 4e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 66
Query: 61 ct 62
||
Sbjct: 67 ct 68
>30180_ptr-mir-30c-2:mirbase
Length = 72
Score = 115 bits (58), Expect = 4e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 66
Query: 61 ct 62
||
Sbjct: 67 ct 68
>26977_eca-mir-30c-2:mirbase
Length = 60
Score = 103 bits (52), Expect = 2e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaagtgagaaagctgggagaaggctgtttact 60
>33170_bta-mir-30f:mirbase
Length = 84
Score = 101 bits (51), Expect = 6e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
|||||||| |||||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct: 14 tgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctgtttact 73
Query: 61 ctctctgcctt 71
|||||||||||
Sbjct: 74 ctctctgcctt 84
>31452_oan-mir-30c:mirbase
Length = 122
Score = 95.6 bits (48), Expect = 4e-21
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 31 tgtaaacatcctacactctcagctgtagatg-tgagaaagctgggagaaggctgtttact 89
Query: 61 ctctctgccttg 72
||||||||||||
Sbjct: 90 ctctctgccttg 101
>25735_xtr-mir-30c-2:mirbase
Length = 78
Score = 87.7 bits (44), Expect = 9e-19
Identities = 62/67 (92%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtggaaa--tacaaagctgggggaaggctgtttact 71
Query: 61 ctctctg 67
|||||||
Sbjct: 72 ctctctg 78
>25734_xtr-mir-30c-1:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 8e-10
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
||||||||||||||||||||||||||| | | |||| |||||||||||| ||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgaaca-taaggtggctgggagaagggtgtttact 75
Query: 61 c 61
|
Sbjct: 76 c 76
>25918_gga-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtg 27
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>26655_cfa-mir-30c-1:mirbase
Length = 61
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtg 27
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26976_eca-mir-30c:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtg 27
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>27683_mml-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtg 27
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>28393_hsa-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtg 27
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>30179_ptr-mir-30c-1:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtg 27
|||||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactctcagctgtg 42
>30784_ppy-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtg 27
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>31808_mmu-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtg 27
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>32690_rno-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtg 27
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>33167_bta-mir-30c:mirbase
Length = 105
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtg 27
|||||||||||||||||||||||||||
Sbjct: 26 tgtaaacatcctacactctcagctgtg 52
>33942_ssc-mir-30c-1:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtg 27
|||||||||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctgtg 36
>34249_dre-mir-30c:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctg 25
|||||||||||||||||||||||||
Sbjct: 11 tgtaaacatcctacactctcagctg 35
>25460_pma-mir-30f-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtg 27
|||||||| ||||||||||||||||||
Sbjct: 10 tgtaaacaccctacactctcagctgtg 36
>25462_pma-mir-30g:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctgtg 27
|||||||||||| ||||||||||||||
Sbjct: 12 tgtaaacatccttcactctcagctgtg 38
>25461_pma-mir-30f-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctcagctg 25
|||||||| ||||||||||||||||
Sbjct: 11 tgtaaacaccctacactctcagctg 35
>34574_fru-mir-30c:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctc 20
||||||||||||||||||||
Sbjct: 9 tgtaaacatcctacactctc 28
>34721_tni-mir-30c:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgtaaacatcctacactctc 20
||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctc 29
