miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25922_gga-mir-31:mirbase
Length = 94
Score = 149 bits (75), Expect = 5e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 8 atgcagagctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatg 67
|||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 8 atgcagagctggaggggaggcaagatgttggcatagctgttaacctaaaaacctgctatg 67
Query: 68 ccaacatattgtcatctttcctgtctg 94
|||||||||||||||||||||||||||
Sbjct: 68 ccaacatattgtcatctttcctgtctg 94
>27357_mdo-mir-31:mirbase
Length = 87
Score = 119 bits (60), Expect = 4e-28
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 14 agctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaaca 73
||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 1 agctggagaggaggcaagatgttggcatagctgttgaactgagaacctgctatgccaaca 60
Query: 74 tattgtcatctttcctgtct 93
||||| |||||||| |||||
Sbjct: 61 tattgccatctttcttgtct 80
>31812_mmu-mir-31:mirbase
Length = 106
Score = 117 bits (59), Expect = 2e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 16 ctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacata 75
||||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||
Sbjct: 19 ctggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacata 78
Query: 76 ttgtcatctttcctgtctg 94
||| |||||||||||||||
Sbjct: 79 ttgccatctttcctgtctg 97
>32694_rno-mir-31:mirbase
Length = 106
Score = 117 bits (59), Expect = 2e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 16 ctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacata 75
||||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||
Sbjct: 19 ctggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacata 78
Query: 76 ttgtcatctttcctgtctg 94
||| |||||||||||||||
Sbjct: 79 ttgccatctttcctgtctg 97
>33042_rno-mir-3554:mirbase
Length = 118
Score = 117 bits (59), Expect = 2e-27
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 16 ctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacata 75
||||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||
Sbjct: 94 ctggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacata 35
Query: 76 ttgtcatctttcctgtctg 94
||| |||||||||||||||
Sbjct: 34 ttgccatctttcctgtctg 16
>31456_oan-mir-31:mirbase
Length = 136
Score = 109 bits (55), Expect = 4e-25
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 11 cagagctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgcca 70
||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 3 cagagctggagagaaggcaagatgttggcatagctgttgagttaagaacctgctatgccg 62
Query: 71 acatattgtcatctttcctgtct 93
|||| |||||||||||| |||||
Sbjct: 63 acatgttgtcatctttcttgtct 85
>26980_eca-mir-31:mirbase
Length = 67
Score = 93.7 bits (47), Expect = 3e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacatatt 77
||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 60
Query: 78 gtcatct 84
| |||||
Sbjct: 61 gccatct 67
>27687_mml-mir-31:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 3e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacatatt 77
||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gtcatctttcc 88
| |||||||||
Sbjct: 61 gccatctttcc 71
>28194_mne-mir-31:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 3e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacatatt 77
||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gtcatctttcc 88
| |||||||||
Sbjct: 61 gccatctttcc 71
>28282_ggo-mir-31:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 3e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacatatt 77
||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gtcatctttcc 88
| |||||||||
Sbjct: 61 gccatctttcc 71
>28397_hsa-mir-31:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 3e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacatatt 77
||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gtcatctttcc 88
| |||||||||
Sbjct: 61 gccatctttcc 71
>30069_ppa-mir-31:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 3e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacatatt 77
||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gtcatctttcc 88
| |||||||||
Sbjct: 61 gccatctttcc 71
>30183_ptr-mir-31:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 3e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacatatt 77
||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gtcatctttcc 88
| |||||||||
Sbjct: 61 gccatctttcc 71
>30787_ppy-mir-31:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 3e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacatatt 77
||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gtcatctttcc 88
| |||||||||
Sbjct: 61 gccatctttcc 71
>33171_bta-mir-31:mirbase
Length = 94
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 16 ctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacata 75
||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct: 16 ctggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacata 75
Query: 76 ttgtcatct 84
||| |||||
Sbjct: 76 ttgccatct 84
>26659_cfa-mir-31:mirbase
Length = 59
Score = 77.8 bits (39), Expect = 1e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacatattgtcatc 83
|||||||||| ||||||||||||||| || | |||||||||||||||||||||| ||||
Sbjct: 1 aggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatattgccatc 59
>25738_xtr-mir-31:mirbase
Length = 88
Score = 63.9 bits (32), Expect = 2e-11
Identities = 67/76 (88%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 19 gagaggaggcaagatgttggcatagctgttg-atctaaaaacctgctatgccaacatatt 77
||||||||||||||||||||||||||||||| |||| ||||| | | ||||||| ||||
Sbjct: 11 gagaggaggcaagatgttggcatagctgttgcatct-gaaaccagttgtgccaacctatt 69
Query: 78 gtcatctttcctgtct 93
| |||||||| |||||
Sbjct: 70 gccatctttcttgtct 85
>34869_sko-mir-31:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 23 ggaggcaagatgttggcatagctgtt 48
||||||||||||||||||||||||||
Sbjct: 19 ggaggcaagatgttggcatagctgtt 44
>38622_ppc-mir-72:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 gaggcaagatgttggcatagctg 46
|||||||||||||||||||||||
Sbjct: 23 gaggcaagatgttggcatagctg 45
>24656_bfl-mir-31:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 ggcaagatgttggcatagctgtt 48
|||||||||||||||||||||||
Sbjct: 20 ggcaagatgttggcatagctgtt 42
>34252_dre-mir-31:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 ggcaagatgttggcatagctgtt 48
|||||||||||||||||||||||
Sbjct: 9 ggcaagatgttggcatagctgtt 31
>34813_spu-mir-31:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctgt 47
|||||||||||||||||||||||
Sbjct: 19 aggcaagatgttggcatagctgt 41
>38856_lgi-mir-31:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctg 46
||||||||||||||||||||||
Sbjct: 21 aggcaagatgttggcatagctg 42
>38737_cte-mir-31:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctg 46
||||||||||||||||||||||
Sbjct: 21 aggcaagatgttggcatagctg 42
>38534_crm-mir-72:mirbase
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctg 46
||||||||||||||||||||||
Sbjct: 21 aggcaagatgttggcatagctg 42
>38106_bma-mir-72:mirbase
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctg 46
||||||||||||||||||||||
Sbjct: 18 aggcaagatgttggcatagctg 39
>38308_cel-mir-72:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctg 46
||||||||||||||||||||||
Sbjct: 17 aggcaagatgttggcatagctg 38
>35182_aae-mir-31:mirbase
Length = 149
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 26 ggcaagatgttggcatagctg 46
|||||||||||||||||||||
Sbjct: 52 ggcaagatgttggcatagctg 72
>36013_cqu-mir-31:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 26 ggcaagatgttggcatagctg 46
|||||||||||||||||||||
Sbjct: 13 ggcaagatgttggcatagctg 33
>24814_cin-mir-31:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26 ggcaagatgttggcatagct 45
||||||||||||||||||||
Sbjct: 17 ggcaagatgttggcatagct 36
>25319_csa-mir-31:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26 ggcaagatgttggcatagct 45
||||||||||||||||||||
Sbjct: 17 ggcaagatgttggcatagct 36
