miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25924_gga-mir-33:mirbase
Length = 69
Score = 97.6 bits (49), Expect = 9e-22
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 6 ctgtagtgcattgtagttgcattgcatgttgtggcagtgactgtgcaatgtttctgcagt 65
||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct: 1 ctgtagtgcattgtagttgcattgcatgtgctggcagtaactgtgcaatgttcctgcagt 60
Query: 66 gcagt 70
|||||
Sbjct: 61 gcagt 65
>32696_rno-mir-33:mirbase
Length = 69
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatgttgtggcagtgactgtgcaatgtttctgcagtgca 68
||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgca 63
>31814_mmu-mir-33:mirbase
Length = 69
Score = 69.9 bits (35), Expect = 2e-13
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 6 ctgtagtgcattgtagttgcattgcatgttgtggcagtgactgtgcaatgtttctgcagt 65
|||| ||||||||||||||||||||||||| ||||| | |||||||||||||| ||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgttctggcaatacctgtgcaatgtttccacagt 60
Query: 66 gca 68
|||
Sbjct: 61 gca 63
>26661_cfa-mir-33:mirbase
Length = 61
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatgttgtggcagtgactgtgcaatgtttctgcagtgca 68
||||||||||||||||||||||||| |||| || | |||||||||||| |||||||
Sbjct: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgca 58
>31458_oan-mir-33a:mirbase
Length = 97
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 gctgtagtgcattgtagttgcattgcatgt 34
||||||||||||||||||||||||||||||
Sbjct: 16 gctgtagtgcattgtagttgcattgcatgt 45
>31459_oan-mir-33a:mirbase
Length = 97
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 gctgtagtgcattgtagttgcattgcatgt 34
||||||||||||||||||||||||||||||
Sbjct: 16 gctgtagtgcattgtagttgcattgcatgt 45
>33173_bta-mir-33a:mirbase
Length = 69
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatgttgtggcagtgactgtgcaatgtttctgcagtgca 68
||||||||||||||||||||||||| |||| || | |||||||||||| |||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgca 63
>26982_eca-mir-33a:mirbase
Length = 69
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 6 ctgtagtgcattgtagttgcattgcatgttgtggc 40
|||| ||||||||||||||||||||||||| ||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgttctggc 35
>28284_ggo-mir-33:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 6 ctgtagtgcattgtagttgcattgcatgtt 35
|||| |||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgtt 30
>28399_hsa-mir-33a:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 6 ctgtagtgcattgtagttgcattgcatgtt 35
|||| |||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgtt 30
>30071_ppa-mir-33:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 6 ctgtagtgcattgtagttgcattgcatgtt 35
|||| |||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgtt 30
>30185_ptr-mir-33a:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 6 ctgtagtgcattgtagttgcattgcatgtt 35
|||| |||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgtt 30
>25740_xtr-mir-33a:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ctgtagtgcattgtagttgcattgcatgt 34
|||| ||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgt 29
>27689_mml-mir-33a:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatgtt 35
|||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgtt 30
>28196_mne-mir-33:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatgtt 35
|||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgtt 30
>30789_ppy-mir-33:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatgtt 35
|||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgtt 30
>37721_tca-mir-33:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatgtt 35
|||||||||||||||||||||||||
Sbjct: 25 gtgcattgtagttgcattgcatgtt 49
>37722_tca-mir-33:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatgtt 35
|||||||||||||||||||||||||
Sbjct: 25 gtgcattgtagttgcattgcatgtt 49
>24657_bfl-mir-33-1:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatgt 34
||||||||||||||||||||||||
Sbjct: 7 gtgcattgtagttgcattgcatgt 30
>24658_bfl-mir-33-2:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatgt 34
||||||||||||||||||||||||
Sbjct: 16 gtgcattgtagttgcattgcatgt 39
>37644_nvi-mir-33:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 agtgcattgtagttgcattgcatg 33
||||||||||||||||||||||||
Sbjct: 30 agtgcattgtagttgcattgcatg 53
>38738_cte-mir-33:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatg 33
|||||||||||||||||||||||
Sbjct: 21 gtgcattgtagttgcattgcatg 43
>35004_dpu-mir-33:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatgttgt 37
||||||||||||||||||||| |||||
Sbjct: 21 gtgcattgtagttgcattgcacgttgt 47
>35357_ame-mir-33:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatg 33
|||||||||||||||||||||||
Sbjct: 31 gtgcattgtagttgcattgcatg 53
>38857_lgi-mir-33:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcat 32
||||||||||||||||||||||
Sbjct: 21 gtgcattgtagttgcattgcat 42
>31460_oan-mir-33b:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 ctgtagtgcattgtagttgcattgca 31
|||| |||||||||||||||||||||
Sbjct: 9 ctgtcgtgcattgtagttgcattgca 34
>31461_oan-mir-33b:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 ctgtagtgcattgtagttgcattgca 31
|||| |||||||||||||||||||||
Sbjct: 9 ctgtcgtgcattgtagttgcattgca 34
>35530_bmo-mir-33:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 agtgcattgtagttgcattgca 31
||||||||||||||||||||||
Sbjct: 10 agtgcattgtagttgcattgca 31
>24815_cin-mir-33:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgca 31
|||||||||||||||||||||
Sbjct: 16 gtgcattgtagttgcattgca 36
>25464_pma-mir-33a:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 gctgtagtgcattgtagttgcattg 29
||||| |||||||||||||||||||
Sbjct: 10 gctgtggtgcattgtagttgcattg 34
>27359_mdo-mir-33:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgca 31
|||||||||||||||||||||
Sbjct: 2 gtgcattgtagttgcattgca 22
>35183_aae-mir-33:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgca 31
|||||||||||||||||||||
Sbjct: 9 gtgcattgtagttgcattgca 29
>36014_cqu-mir-33:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgca 31
|||||||||||||||||||||
Sbjct: 3 gtgcattgtagttgcattgca 23
>25741_xtr-mir-33b:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcatgt 34
||||||||| ||||||||||||||
Sbjct: 6 gtgcattgttgttgcattgcatgt 29
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 tgtgcaatgtttctgcagtgcagt 70
|||||||||||||| |||||||||
Sbjct: 42 tgtgcaatgtttcttcagtgcagt 65
