miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25925_gga-mir-34a:mirbase
Length = 109
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 11 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaatcag 70
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 71 caagtatactgc 82
>27557_lla-mir-34a:mirbase
Length = 111
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtgaaggaagcaatcag 71
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 72 caagtatactgc 83
>27604_sla-mir-34a:mirbase
Length = 111
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtgaaggaagcaatcag 71
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 72 caagtatactgc 83
>27496_age-mir-34a:mirbase
Length = 111
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 12 agtgtttctttggcagtgtcttagctggttgttgtgtgcaatagtgaaggaagcaatcag 71
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 72 caagtatactgc 83
>27691_mml-mir-34a:mirbase
Length = 110
Score = 127 bits (64), Expect = 1e-30
Identities = 71/72 (98%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcag 70
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 71 caagtatactgc 82
>28197_mne-mir-34a:mirbase
Length = 110
Score = 127 bits (64), Expect = 1e-30
Identities = 71/72 (98%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcag 70
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 71 caagtatactgc 82
>28285_ggo-mir-34a:mirbase
Length = 110
Score = 127 bits (64), Expect = 1e-30
Identities = 71/72 (98%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcag 70
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 71 caagtatactgc 82
>28401_hsa-mir-34a:mirbase
Length = 110
Score = 127 bits (64), Expect = 1e-30
Identities = 71/72 (98%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcag 70
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 71 caagtatactgc 82
>30072_ppa-mir-34a:mirbase
Length = 110
Score = 127 bits (64), Expect = 1e-30
Identities = 71/72 (98%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcag 70
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 71 caagtatactgc 82
>30187_ptr-mir-34a:mirbase
Length = 110
Score = 127 bits (64), Expect = 1e-30
Identities = 71/72 (98%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcag 70
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 71 caagtatactgc 82
>30791_ppy-mir-34a:mirbase
Length = 110
Score = 127 bits (64), Expect = 1e-30
Identities = 71/72 (98%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aaggaagcaatcag 70
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 71 caagtatactgc 82
>27360_mdo-mir-34a:mirbase
Length = 111
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 12 agtgtttctttggcagtgtcttagctggttgttgtgagtaatagataaggaagcaatcag 71
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 72 caagtatactgc 83
>33175_bta-mir-34a:mirbase
Length = 107
Score = 111 bits (56), Expect = 7e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
|||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct: 12 agtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcaggaagcaatcag 71
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 72 caagtatactgc 83
>26663_cfa-mir-34a:mirbase
Length = 66
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 11 tggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcagcaagtatact 70
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
Query: 71 gc 72
||
Sbjct: 61 gc 62
>31815_mmu-mir-34a:mirbase
Length = 102
Score = 101 bits (51), Expect = 6e-23
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 6 ttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcagcaagt 65
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 15 ttctttggcagtgtcttagctggttgttgtgagtattagctaaggaagcaatcagcaagt 74
Query: 66 atactgc 72
|||||||
Sbjct: 75 atactgc 81
>32697_rno-mir-34a:mirbase
Length = 102
Score = 101 bits (51), Expect = 6e-23
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 6 ttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcagcaagt 65
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 15 ttctttggcagtgtcttagctggttgttgtgagtattagctaaggaagcaatcagcaagt 74
Query: 66 atactgc 72
|||||||
Sbjct: 75 atactgc 81
>26984_eca-mir-34:mirbase
Length = 63
Score = 91.7 bits (46), Expect = 6e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 11 tggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcagcaagtatact 70
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 1 tggcagtgtcttagctggttgttgtgagtaatagtgcgggaagcaatcagcaagtatact 60
Query: 71 gc 72
||
Sbjct: 61 gc 62
>33948_ssc-mir-34a:mirbase
Length = 76
Score = 91.7 bits (46), Expect = 6e-20
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 5 tttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcagca 62
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagca 58
>25742_xtr-mir-34a:mirbase
Length = 96
Score = 71.9 bits (36), Expect = 6e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtg 36
||||||||||||||||||||||||||||||||||||
Sbjct: 6 agtgtttctttggcagtgtcttagctggttgttgtg 41
>34253_dre-mir-34:mirbase
Length = 98
Score = 63.9 bits (32), Expect = 1e-11
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
|||| |||| |||||||||||||||||||||||||| | | | | || |||||||||||
Sbjct: 9 agtggttctctggcagtgtcttagctggttgttgtgtggagt-gagaacgaagcaatcag 67
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 68 caagtatactgc 79
