miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26434_tgu-mir-34c-1:mirbase
Length = 77
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 cttggtttgcaggcagtgtagttagctgattgtctgcagaattccacaatcactaacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttggtttgcaggcagtgtagttagctgattgtctgcagaattccacaatcactaacttc 60
Query: 61 actgccaccaaaacaag 77
|||||||||||||||||
Sbjct: 61 actgccaccaaaacaag 77
>25926_gga-mir-34b:mirbase
Length = 84
Score = 81.8 bits (41), Expect = 6e-17
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 1 cttggtttgcaggcagtgtagttagctgattgtctgcagaattccacaatcactaacttc 60
||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct: 4 cttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaattc 63
Query: 61 actgccaccaaaacaag 77
||||||| |||||||||
Sbjct: 64 actgccatcaaaacaag 80
>25743_xtr-mir-34b-1:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 ggtttgcaggcagtgtagttagctgattgt 33
||||| ||||||||||||||||||||||||
Sbjct: 6 ggttttcaggcagtgtagttagctgattgt 35
>25745_xtr-mir-34b-3:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 ggtttgcaggcagtgtagttagctgattgt 33
||||| ||||||||||||||||||||||||
Sbjct: 6 ggttttcaggcagtgtagttagctgattgt 35
>25744_xtr-mir-34b-2:mirbase
Length = 67
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 caggcagtgtagttagctgattgt 33
||||||||||||||||||||||||
Sbjct: 3 caggcagtgtagttagctgattgt 26
>25746_xtr-mir-34b-4:mirbase
Length = 67
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 caggcagtgtagttagctgattgt 33
||||||||||||||||||||||||
Sbjct: 3 caggcagtgtagttagctgattgt 26
>26664_cfa-mir-34b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 46 acaatcactaacttcactgccaccaaaacaag 77
||||||||||||| |||||||| |||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaag 80
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 ggtttgcaggcagtgtagttagctgattgtc 34
|||||| |||||||||| |||||||||||||
Sbjct: 7 ggtttgtaggcagtgtaattagctgattgtc 37
>26985_eca-mir-34b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 46 acaatcactaacttcactgccaccaaaacaag 77
||||||||||||| |||||||| |||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaag 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ggtttgcaggcagtgtagttagctgattgt 33
|||||| |||||||||| ||||||||||||
Sbjct: 7 ggtttgtaggcagtgtaattagctgattgt 36
>26986_eca-mir-34b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 46 acaatcactaacttcactgccaccaaaacaag 77
||||||||||||| |||||||| |||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaag 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ggtttgcaggcagtgtagttagctgattgt 33
|||||| |||||||||| ||||||||||||
Sbjct: 7 ggtttgtaggcagtgtaattagctgattgt 36
>27692_mml-mir-34b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 46 acaatcactaacttcactgccaccaaaacaag 77
||||||||||||| |||||||| |||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaag 80
>28402_hsa-mir-34b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 46 acaatcactaacttcactgccaccaaaacaag 77
||||||||||||| |||||||| |||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaag 80
>30188_ptr-mir-34b:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 46 acaatcactaacttcactgccaccaaaacaag 77
||||||||||||| |||||||| |||||||||
Sbjct: 48 acaatcactaactccactgccatcaaaacaag 79
>30792_ppy-mir-34b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 46 acaatcactaacttcactgccaccaaaacaag 77
||||||||||||| |||||||| |||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaag 80
>31816_mmu-mir-34b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 46 acaatcactaacttcactgccaccaaaacaag 77
||||||||||||| |||||||| |||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaag 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ggtttgcaggcagtgtagttagctgattgt 33
|||||| |||||||||| ||||||||||||
Sbjct: 7 ggtttgtaggcagtgtaattagctgattgt 36
>31817_mmu-mir-34b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 46 acaatcactaacttcactgccaccaaaacaag 77
||||||||||||| |||||||| |||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaag 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ggtttgcaggcagtgtagttagctgattgt 33
|||||| |||||||||| ||||||||||||
Sbjct: 7 ggtttgtaggcagtgtaattagctgattgt 36
>32698_rno-mir-34b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 46 acaatcactaacttcactgccaccaaaacaag 77
||||||||||||| |||||||| |||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaag 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ggtttgcaggcagtgtagttagctgattgt 33
|||||| |||||||||| ||||||||||||
Sbjct: 7 ggtttgtaggcagtgtaattagctgattgt 36
>25927_gga-mir-34c:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 caggcagtgtagttagctgattg 32
|||||||||||||||||||||||
Sbjct: 12 caggcagtgtagttagctgattg 34
>26433_tgu-mir-34b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 caggcagtgtagttagctgattg 32
|||||||||||||||||||||||
Sbjct: 40 caggcagtgtagttagctgattg 62
>27693_mml-mir-34c:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 caggcagtgtagttagctgattg 32
|||||||||||||||||||||||
Sbjct: 12 caggcagtgtagttagctgattg 34
>27694_mml-mir-34c:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 caggcagtgtagttagctgattg 32
|||||||||||||||||||||||
Sbjct: 12 caggcagtgtagttagctgattg 34
>26665_cfa-mir-34c:mirbase
Length = 55
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 1 aggcagtgtagttagctgattg 22
>26987_eca-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>28403_hsa-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>28404_hsa-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>30189_ptr-mir-34c:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 12 aggcagtgtagttagctgattg 33
>30793_ppy-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>30794_ppy-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>31462_oan-mir-34:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 21 aggcagtgtagttagctgattg 42
>31818_mmu-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>32699_rno-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>33176_bta-mir-34b:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ggtttgcaggcagtgtagttagctgattgt 33
|||||| |||||||||| ||||||||||||
Sbjct: 7 ggtttgtaggcagtgtaattagctgattgt 36
>33177_bta-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>33949_ssc-mir-34c:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>34254_dre-mir-34b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 2 ttggtttgcaggcagtgtagttagctgattgt 33
||||| || ||||||||| |||||||||||||
Sbjct: 5 ttggtctgtaggcagtgttgttagctgattgt 36
