miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26440_tgu-mir-100-1:mirbase
Length = 111
Score = 220 bits (111), Expect = 2e-58
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1 tgctgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctat 60
Query: 61 aggtctgtggctggctggcaagagcaccccggggtgctgctgcacttcccc 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggtctgtggctggctggcaagagcaccccggggtgctgctgcacttcccc 111
>25930_gga-mir-100:mirbase
Length = 80
Score = 117 bits (59), Expect = 2e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtggtcatattccacacaagcttgtatctatagg 65
Query: 64 tctgtggctggctgg 78
| |||| ||| ||||
Sbjct: 66 tatgtgtctgtctgg 80
>27364_mdo-mir-100:mirbase
Length = 80
Score = 99.6 bits (50), Expect = 4e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtggtgatattccacacaagcttgtgtctatagg 65
Query: 64 tctgtg 69
| ||||
Sbjct: 66 tatgtg 71
>31471_oan-mir-100:mirbase
Length = 81
Score = 99.6 bits (50), Expect = 4e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct: 7 tgccacaaacccgtagatccgaacttgtggtgatattccacacaagcttgtgtctatagg 66
Query: 64 tctgtg 69
| ||||
Sbjct: 67 tatgtg 72
>33958_ssc-mir-100:mirbase
Length = 80
Score = 91.7 bits (46), Expect = 1e-19
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||
Sbjct: 9 tgccacaaacccgtagatccgaacttgtgctgatagtgcacacaagcttgtgtctatagg 68
Query: 64 tctgtg 69
| ||||
Sbjct: 69 tatgtg 74
>28293_ggo-mir-100:mirbase
Length = 80
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtggtattagtccgcacaagcttgtatctatagg 65
Query: 64 tctgtg 69
| ||||
Sbjct: 66 tatgtg 71
>28414_hsa-mir-100:mirbase
Length = 80
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtggtattagtccgcacaagcttgtatctatagg 65
Query: 64 tctgtg 69
| ||||
Sbjct: 66 tatgtg 71
>30080_ppa-mir-100:mirbase
Length = 80
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtggtattagtccgcacaagcttgtatctatagg 65
Query: 64 tctgtg 69
| ||||
Sbjct: 66 tatgtg 71
>30198_ptr-mir-100:mirbase
Length = 80
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtggtattagtccgcacaagcttgtatctatagg 65
Query: 64 tctgtg 69
| ||||
Sbjct: 66 tatgtg 71
>30803_ppy-mir-100:mirbase
Length = 80
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtggtattagtccgcacaagcttgtatctatagg 65
Query: 64 tctgtg 69
| ||||
Sbjct: 66 tatgtg 71
>31827_mmu-mir-100:mirbase
Length = 80
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||||| || | ||||||||||||| ||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtgctgattctgcacacaagcttgtgtctatagg 65
Query: 64 tctgtg 69
| ||||
Sbjct: 66 tatgtg 71
>34263_dre-mir-100-1:mirbase
Length = 96
Score = 79.8 bits (40), Expect = 4e-16
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 1 tgctgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctat 60
||||| |||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 14 tgctgacacaaacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctat 73
Query: 61 aggt 64
||||
Sbjct: 74 aggt 77
>26997_eca-mir-100:mirbase
Length = 55
Score = 75.8 bits (38), Expect = 6e-15
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtgctcatattccacacaagcttgtatctataggt 64
|||||||||||||||||||||| | ||| ||||||||||||||| |||||||||
Sbjct: 1 aacccgtagatccgaacttgtggtgatagtccacacaagcttgtgtctataggt 54
>27704_mml-mir-100:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 6e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||| | || ||| ||||||||||| ||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtggtattagtccgcacaagcttgtgtctatagg 65
Query: 64 tctgtg 69
| ||||
Sbjct: 66 tatgtg 71
>32708_rno-mir-100:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 6e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||||| | | ||||||||||||| ||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtgctgaccatgcacacaagcttgtgtctatagg 65
Query: 64 tctgtg 69
| ||||
Sbjct: 66 tatgtg 71
>33187_bta-mir-100:mirbase
Length = 76
Score = 75.8 bits (38), Expect = 6e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||| | || | ||||||||||||| ||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtggtggtagtgcacacaagcttgtgtctatagg 65
Query: 64 tctgtg 69
| ||||
Sbjct: 66 tatgtg 71
>26674_cfa-mir-99a-2:mirbase
Length = 57
Score = 67.9 bits (34), Expect = 1e-12
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtgctcatattccacacaagcttgtatctataggt 64
||||||||||||||| |||||| | ||| ||||||||||||||| |||||||||
Sbjct: 1 aacccgtagatccgatcttgtggtgatagtccacacaagcttgtgtctataggt 54
>27501_age-mir-100:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||| | || || ||||||||||| ||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtggtgttagtctgcacaagcttgtgtctatagg 65
Query: 64 tctgtg 69
| ||||
Sbjct: 66 tatgtg 71
>27563_lla-mir-100:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||| | || || ||||||||||| ||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtggtgttagtctgcacaagcttgtgtctatagg 65
Query: 64 tctgtg 69
| ||||
Sbjct: 66 tatgtg 71
>34264_dre-mir-100-2:mirbase
Length = 75
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 2 gctgccacaaacccgtagatccgaacttgtg 32
|||||||||||||||||||||||||||||||
Sbjct: 2 gctgccacaaacccgtagatccgaacttgtg 32
>27610_sla-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 4e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctatagg 63
||||||||||||||||||||||||||||| | || | ||||||||||| ||||||||
Sbjct: 6 tgccacaaacccgtagatccgaacttgtggtgttaatgtgcacaagcttgtgtctatagg 65
Query: 64 tctgtg 69
| ||||
Sbjct: 66 tatgtg 71
>25468_pma-mir-100a:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 gccacaaacccgtagatccgaacttgtg 32
||||||||||||||||||||||||||||
Sbjct: 11 gccacaaacccgtagatccgaacttgtg 38
>25470_pma-mir-100c:mirbase
Length = 88
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 5 gccacaaacccgtagatccgaacttgtg 32
||||||||||||||||||||||||||||
Sbjct: 76 gccacaaacccgtagatccgaacttgtg 49
>24672_bfl-mir-100:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2 gctgccacaaacccgtagatccgaacttgtg 32
||||||| |||||||||||||||||||||||
Sbjct: 12 gctgccataaacccgtagatccgaacttgtg 42
>25755_xtr-mir-100:mirbase
Length = 76
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtgct 34
||||| |||||||||||||||||||||||||
Sbjct: 3 tgccataaacccgtagatccgaacttgtgct 33
>34579_fru-mir-100:mirbase
Length = 63
Score = 54.0 bits (27), Expect = 2e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 7 cacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctataggtct 66
|||||||||||||||||||||||||| | | || |||||||| |||||||||||| |
Sbjct: 1 cacaaacccgtagatccgaacttgtggtgactggccgcacaagctcgtatctataggtat 60
Query: 67 gtg 69
|||
Sbjct: 61 gtg 63
>34726_tni-mir-100:mirbase
Length = 63
Score = 54.0 bits (27), Expect = 2e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 7 cacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctataggtct 66
|||||||||||||||||||||||||| | | || |||||||| |||||||||||| |
Sbjct: 1 cacaaacccgtagatccgaacttgtggtgactggccgcacaagctcgtatctataggtat 60
Query: 67 gtg 69
|||
Sbjct: 61 gtg 63
>35288_aga-mir-100:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtgct 34
|||||||||||||||||||||||||
Sbjct: 14 aaacccgtagatccgaacttgtgct 38
>35190_aae-mir-100:mirbase
Length = 126
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtgct 34
||||||||||||||||||||||||
Sbjct: 31 aacccgtagatccgaacttgtgct 54
>36020_cqu-mir-100:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtgct 34
||||||||||||||||||||||||
Sbjct: 23 aacccgtagatccgaacttgtgct 46
>38866_lgi-mir-100:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtg 32
|||||||||||||||||||||||
Sbjct: 20 aaacccgtagatccgaacttgtg 42
>34877_sko-mir-100:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtg 32
|||||||||||||||||||||||
Sbjct: 20 aaacccgtagatccgaacttgtg 42
>35537_bmo-mir-100:mirbase
Length = 142
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtgc 33
|||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtgc 43
>25469_pma-mir-100b:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 gccacaaacccgtagatccgaacttg 30
||||||||||||||||| ||||||||
Sbjct: 11 gccacaaacccgtagattcgaacttg 36
>34262_dre-mir-99-2:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 cacaaacccgtagatccgaacttgtg 32
||||||||||||||||||| ||||||
Sbjct: 8 cacaaacccgtagatccgatcttgtg 33
>34970_isc-mir-100:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtg 32
||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtg 42
>35010_dpu-mir-100:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtg 32
||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtg 42
>35366_ame-mir-100:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtg 32
||||||||||||||||||||||
Sbjct: 19 aacccgtagatccgaacttgtg 40
>37648_nvi-mir-100:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtg 32
||||||||||||||||||||||
Sbjct: 19 aacccgtagatccgaacttgtg 40
>37737_tca-mir-100:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtg 32
||||||||||||||||||||||
Sbjct: 10 aacccgtagatccgaacttgtg 31
>37738_tca-mir-100:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtg 32
||||||||||||||||||||||
Sbjct: 10 aacccgtagatccgaacttgtg 31
>38112_bma-mir-100b:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtg 32
||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtg 42
>39244_nve-mir-100:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 acccgtagatccgaacttgtg 32
|||||||||||||||||||||
Sbjct: 17 acccgtagatccgaacttgtg 37
>35062_api-mir-100:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 acccgtagatccgaacttgtg 32
|||||||||||||||||||||
Sbjct: 22 acccgtagatccgaacttgtg 42
>36106_dan-mir-100:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtgct 34
||||||||| |||||||||||||||
Sbjct: 11 aaacccgtaaatccgaacttgtgct 35
>36184_der-mir-100:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtgct 34
||||||||| |||||||||||||||
Sbjct: 11 aaacccgtaaatccgaacttgtgct 35
>36272_dgr-mir-100:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtgct 34
||||||||| |||||||||||||||
Sbjct: 11 aaacccgtaaatccgaacttgtgct 35
>36383_dme-mir-100:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtgct 34
||||||||| |||||||||||||||
Sbjct: 11 aaacccgtaaatccgaacttgtgct 35
>36384_dme-mir-100:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtgct 34
||||||||| |||||||||||||||
Sbjct: 11 aaacccgtaaatccgaacttgtgct 35
>36782_dmo-mir-100:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtgct 34
||||||||| |||||||||||||||
Sbjct: 11 aaacccgtaaatccgaacttgtgct 35
>37144_dse-mir-100:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtgct 34
||||||||| |||||||||||||||
Sbjct: 11 aaacccgtaaatccgaacttgtgct 35
>37219_dsi-mir-100:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtgct 34
||||||||| |||||||||||||||
Sbjct: 11 aaacccgtaaatccgaacttgtgct 35
>37358_dvi-mir-100:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtgct 34
||||||||| |||||||||||||||
Sbjct: 11 aaacccgtaaatccgaacttgtgct 35
>37437_dwi-mir-100:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtgct 34
||||||||| |||||||||||||||
Sbjct: 11 aaacccgtaaatccgaacttgtgct 35
>37512_dya-mir-100:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtgct 34
||||||||| |||||||||||||||
Sbjct: 11 aaacccgtaaatccgaacttgtgct 35
