miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31478_oan-mir-122:mirbase
Length = 111
Score = 119 bits (60), Expect = 3e-28
Identities = 67/68 (98%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 ccagagctgtggagtgtgacaatggtgtttgtgtcca-tctatcaaacgccattatcaca 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 20 ccagagctgtggagtgtgacaatggtgtttgtgtccagtctatcaaacgccattatcaca 79
Query: 61 ctaaatag 68
||||||||
Sbjct: 80 ctaaatag 87
>25937_gga-mir-122-1:mirbase
Length = 77
Score = 117 bits (59), Expect = 1e-27
Identities = 66/67 (98%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtcc-atctatcaaacgccattatcacac 61
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
Query: 62 taaatag 68
|||||||
Sbjct: 61 taaatag 67
>25938_gga-mir-122-2:mirbase
Length = 77
Score = 109 bits (55), Expect = 3e-25
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtcc-atctatcaaacgccattatcacac 61
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 cagagctatggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
Query: 62 taaatag 68
|||||||
Sbjct: 61 taaatag 67
>27371_mdo-mir-122:mirbase
Length = 74
Score = 109 bits (55), Expect = 3e-25
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtcca-tctatcaaacgccattatcacac 61
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 cagagctatggagtgtgacaatggtgtttgtgtccagtctatcaaacgccattatcacac 60
Query: 62 taaatag 68
|||||||
Sbjct: 61 taaatag 67
>33197_bta-mir-122:mirbase
Length = 85
Score = 109 bits (55), Expect = 3e-25
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtcc-atctatcaaacgccattatcacac 61
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacac 66
Query: 62 taaatag 68
|||||||
Sbjct: 67 taaatag 73
>33967_ssc-mir-122:mirbase
Length = 85
Score = 109 bits (55), Expect = 3e-25
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtcc-atctatcaaacgccattatcacac 61
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacac 66
Query: 62 taaatag 68
|||||||
Sbjct: 67 taaatag 73
>27006_eca-mir-122:mirbase
Length = 66
Score = 103 bits (52), Expect = 2e-23
Identities = 62/64 (96%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 6 agctgtggagtgtgacaatggtgtttgtgtcc-atctatcaaacgccattatcacactaa 64
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaa 60
Query: 65 atag 68
||||
Sbjct: 61 atag 64
>27714_mml-mir-122a:mirbase
Length = 85
Score = 101 bits (51), Expect = 6e-23
Identities = 64/67 (95%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtc-catctatcaaacgccattatcacac 61
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 66
Query: 62 taaatag 68
|||||||
Sbjct: 67 taaatag 73
>28426_hsa-mir-122:mirbase
Length = 85
Score = 101 bits (51), Expect = 6e-23
Identities = 64/67 (95%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtc-catctatcaaacgccattatcacac 61
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 66
Query: 62 taaatag 68
|||||||
Sbjct: 67 taaatag 73
>29379_hsa-mir-3591:mirbase
Length = 73
Score = 101 bits (51), Expect = 6e-23
Identities = 64/67 (95%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtc-catctatcaaacgccattatcacac 61
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 73 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 14
Query: 62 taaatag 68
|||||||
Sbjct: 13 taaatag 7
>29380_hsa-mir-3591:mirbase
Length = 73
Score = 101 bits (51), Expect = 6e-23
Identities = 64/67 (95%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtc-catctatcaaacgccattatcacac 61
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 73 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 14
Query: 62 taaatag 68
|||||||
Sbjct: 13 taaatag 7
>30814_ppy-mir-122:mirbase
Length = 85
Score = 101 bits (51), Expect = 6e-23
Identities = 64/67 (95%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtc-catctatcaaacgccattatcacac 61
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 66
Query: 62 taaatag 68
|||||||
Sbjct: 67 taaatag 73
>31837_mmu-mir-122:mirbase
Length = 66
Score = 95.6 bits (48), Expect = 4e-21
Identities = 61/64 (95%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 6 agctgtggagtgtgacaatggtgtttgtgtcc-atctatcaaacgccattatcacactaa 64
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtccaaaccatcaaacgccattatcacactaa 60
Query: 65 atag 68
||||
Sbjct: 61 atag 64
>34731_tni-mir-122:mirbase
Length = 66
Score = 95.6 bits (48), Expect = 4e-21
Identities = 61/64 (95%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 6 agctgtggagtgtgacaatggtgtttgtgtcc-atctatcaaacgccattatcacactaa 64
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtcctttctttcaaacgccattatcacactaa 60
Query: 65 atag 68
||||
Sbjct: 61 atag 64
>30207_ptr-mir-122:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtc-catctatcaaacgccattatcacac 61
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 6 cagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacac 65
Query: 62 taaatag 68
|||||||
Sbjct: 66 taaatag 72
>26685_cfa-mir-122:mirbase
Length = 58
Score = 91.7 bits (46), Expect = 6e-20
Identities = 56/58 (96%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 11 tggagtgtgacaatggtgtttgtgtcc-atctatcaaacgccattatcacactaaata 67
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1 tggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaaata 58
>25762_xtr-mir-122:mirbase
Length = 69
Score = 81.8 bits (41), Expect = 6e-17
Identities = 57/61 (93%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 5 gagctgtggagtgtgacaatggtgtttgtgtc-catctatcaaacgccattatcacacta 63
||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 1 gagctatggagtgtgacaatggtgtttgtgtcagagctatcaaacgccattatcacacta 60
Query: 64 a 64
|
Sbjct: 61 a 61
>34270_dre-mir-122:mirbase
Length = 76
Score = 79.8 bits (40), Expect = 2e-16
Identities = 64/70 (91%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 2 ccagagctgtggagtgtgacaatggtgtttgtgtccatct---atcaaacgccattatca 58
|||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 2 ccagagctgtggagtgtgacaatggtgtttgtat-catctgtcgtcaaacgccattatca 60
Query: 59 cactaaatag 68
||||||||||
Sbjct: 61 cactaaatag 70
>34584_fru-mir-122:mirbase
Length = 66
Score = 79.8 bits (40), Expect = 2e-16
Identities = 59/64 (92%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 6 agctgtggagtgtgacaatggtgtttgtgtccat-ctatcaaacgccattatcacactaa 64
|||| ||||||||||||||||||||||| ||| | || ||||||||||||||||||||||
Sbjct: 1 agctatggagtgtgacaatggtgtttgtttcctttctttcaaacgccattatcacactaa 60
Query: 65 atag 68
||||
Sbjct: 61 atag 64
>32716_rno-mir-122:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtccatct-atcaaacgccattatcacac 61
||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 7 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 66
Query: 62 taaa 65
||||
Sbjct: 67 taaa 70
>33091_rno-mir-3591:mirbase
Length = 109
Score = 71.9 bits (36), Expect = 6e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtccatct-atcaaacgccattatcacac 61
||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 90 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 31
Query: 62 taaa 65
||||
Sbjct: 30 taaa 27
