miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32730_rno-mir-129-2:mirbase
Length = 97
Score = 117 bits (59), Expect = 1e-27
Identities = 78/83 (93%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 9 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 67
Query: 61 taccccaaaaagcattcgcggag 83
|||||||||||||||||||||||
Sbjct: 68 taccccaaaaagcattcgcggag 90
>33209_bta-mir-129-2:mirbase
Length = 94
Score = 117 bits (59), Expect = 1e-27
Identities = 78/83 (93%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 6 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 64
Query: 61 taccccaaaaagcattcgcggag 83
|||||||||||||||||||||||
Sbjct: 65 taccccaaaaagcattcgcggag 87
>33210_bta-mir-129-2:mirbase
Length = 94
Score = 117 bits (59), Expect = 1e-27
Identities = 78/83 (93%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 6 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 64
Query: 61 taccccaaaaagcattcgcggag 83
|||||||||||||||||||||||
Sbjct: 65 taccccaaaaagcattcgcggag 87
>31854_mmu-mir-129-2:mirbase
Length = 90
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 ttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccctt 61
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 6 ttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccctt 64
Query: 62 accccaaaaagcattcgcggag 83
||||||||||||||||||||||
Sbjct: 65 accccaaaaagcattcgcggag 86
>31855_mmu-mir-129-2:mirbase
Length = 90
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 ttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccctt 61
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 6 ttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccctt 64
Query: 62 accccaaaaagcattcgcggag 83
||||||||||||||||||||||
Sbjct: 65 accccaaaaagcattcgcggag 86
>25770_xtr-mir-129-1:mirbase
Length = 90
Score = 111 bits (56), Expect = 8e-26
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 8 aatctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttacccca 67
|||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
Query: 68 aaaagcattcgcggag 83
||||||||| ||||||
Sbjct: 71 aaaagcatttgcggag 86
>27727_mml-mir-129-2:mirbase
Length = 92
Score = 109 bits (55), Expect = 3e-25
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
||||| |||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 6 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 64
Query: 61 taccccaaaaagcattcgcggag 83
|||||||||||||||||||||||
Sbjct: 65 taccccaaaaagcattcgcggag 87
>28440_hsa-mir-129-2:mirbase
Length = 90
Score = 109 bits (55), Expect = 3e-25
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 5 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 63
Query: 61 taccccaaaaagcattcgcggag 83
|||||||||||||||| ||||||
Sbjct: 64 taccccaaaaagcatttgcggag 86
>28441_hsa-mir-129-2:mirbase
Length = 90
Score = 109 bits (55), Expect = 3e-25
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 5 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 63
Query: 61 taccccaaaaagcattcgcggag 83
|||||||||||||||| ||||||
Sbjct: 64 taccccaaaaagcatttgcggag 86
>30217_ptr-mir-129-2:mirbase
Length = 89
Score = 109 bits (55), Expect = 3e-25
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 4 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 62
Query: 61 taccccaaaaagcattcgcggag 83
|||||||||||||||| ||||||
Sbjct: 63 taccccaaaaagcatttgcggag 85
>30826_ppy-mir-129-2:mirbase
Length = 90
Score = 109 bits (55), Expect = 3e-25
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 5 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 63
Query: 61 taccccaaaaagcattcgcggag 83
|||||||||||||||| ||||||
Sbjct: 64 taccccaaaaagcatttgcggag 86
>33977_ssc-mir-129a:mirbase
Length = 80
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
||||| |||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 1 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 59
Query: 61 taccccaaaaagcattcgcgg 81
|||||||||||||||||||||
Sbjct: 60 taccccaaaaagcattcgcgg 80
>27020_eca-mir-129b:mirbase
Length = 74
Score = 101 bits (51), Expect = 7e-23
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 5 gcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttacc 64
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct: 1 gcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacc 59
Query: 65 ccaaaaagcattcgc 79
|||||||||||||||
Sbjct: 60 ccaaaaagcattcgc 74
>27021_eca-mir-129b:mirbase
Length = 74
Score = 101 bits (51), Expect = 7e-23
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 5 gcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttacc 64
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct: 1 gcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacc 59
Query: 65 ccaaaaagcattcgc 79
|||||||||||||||
Sbjct: 60 ccaaaaagcattcgc 74
>26697_cfa-mir-129-2:mirbase
Length = 63
Score = 79.8 bits (40), Expect = 3e-16
Identities = 59/64 (92%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 11 ctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttaccccaaaa 70
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgtacataactcgatagcc-ggaagcccttaccccaaaa 59
Query: 71 agca 74
||||
Sbjct: 60 agca 63
>34288_dre-mir-129-2:mirbase
Length = 87
Score = 77.8 bits (39), Expect = 1e-15
Identities = 69/78 (88%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 6 cgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttaccc 65
||||||||||||||||||||||||||||| | ||||| | | |||||||||||||||
Sbjct: 9 cgaatctttttgcggtctgggcttgctgttctcaactatcaa--tgggaagcccttaccc 66
Query: 66 caaaaagcattcgcggag 83
||||||||||| ||||||
Sbjct: 67 caaaaagcatttgcggag 84
>34593_fru-mir-129-1:mirbase
Length = 89
Score = 77.8 bits (39), Expect = 1e-15
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
|||| ||||||||||||||||||||||||||||| | | ||| | | ||||||||||
Sbjct: 4 cttcacgaatctttttgcggtctgggcttgctgttctttactggtaatctgggaagccct 63
Query: 61 taccccaaaaagcattcgcggag 83
|||||||||||||||| ||||||
Sbjct: 64 taccccaaaaagcatttgcggag 86
>25478_pma-mir-129a:mirbase
Length = 88
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 3 tcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccctta 62
||||||||||||||||||| |||||||||||| ||| ||| || |||| |||||||||
Sbjct: 7 tcgcgaatctttttgcggtttgggcttgctgttcat--cta-atagccggcaagccctta 63
Query: 63 ccccaaaaagcattcg 78
||||||||||||||||
Sbjct: 64 ccccaaaaagcattcg 79
>34740_tni-mir-129-1:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 70/81 (86%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
|||| ||||||||||||||||||||||||||||| | || | |||| |||||||||
Sbjct: 4 cttcacgaatctttttgcggtctgggcttgctgt---tctctgctcaccc-ggaagccct 59
Query: 61 taccccaaaaagcattcgcgg 81
|||||||||||||||| ||||
Sbjct: 60 taccccaaaaagcatttgcgg 80
>34594_fru-mir-129-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttaccccaaa 69
||||||||||||||||||||||||| | ||| || || ||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 64
Query: 70 aag 72
|||
Sbjct: 65 aag 67
>34741_tni-mir-129-2:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttaccccaaa 69
||||||||||||||||||||||||| | ||| || || ||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 63
Query: 70 aag 72
|||
Sbjct: 64 aag 66
>27018_eca-mir-129a:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaag 72
|||||||||||||||||||||
Sbjct: 48 ggaagcccttaccccaaaaag 68
>27019_eca-mir-129a:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaag 72
|||||||||||||||||||||
Sbjct: 48 ggaagcccttaccccaaaaag 68
>27379_mdo-mir-129:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaag 72
|||||||||||||||||||||
Sbjct: 48 ggaagcccttaccccaaaaag 68
>27725_mml-mir-129:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaag 72
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>27726_mml-mir-129:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaag 72
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>28439_hsa-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaag 72
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>30216_ptr-mir-129-1:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 2 atctttttgcggtctgggcttgctgt 27
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaag 72
|||||||||||||||||||||
Sbjct: 46 ggaagcccttaccccaaaaag 66
>30825_ppy-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaag 72
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>31484_oan-mir-129:mirbase
Length = 128
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 28 atctttttgcggtctgggcttgctgt 53
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaag 72
|||||||||||||||||||||
Sbjct: 72 ggaagcccttaccccaaaaag 92
>31852_mmu-mir-129-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaag 72
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>31853_mmu-mir-129-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaag 72
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>33208_bta-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>33978_ssc-mir-129b:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 9 atctttttgcggtctgggcttgctgt 34
>32729_rno-mir-129-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgt 34
|||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaag 72
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>34287_dre-mir-129-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgt 34
|||||||||||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgt 37
>25771_xtr-mir-129-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||
Sbjct: 9 ctttttgcggtctgggcttgctgt 32
>26696_cfa-mir-129-1:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgt 24
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaag 72
|||||||||||||||||||||
Sbjct: 43 ggaagcccttaccccaaaaag 63
