miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25947_gga-mir-130a:mirbase
Length = 83
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 agagccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 agagccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggc 71
Query: 61 attggctggcag 72
||||||||||||
Sbjct: 72 attggctggcag 83
>34292_dre-mir-130c-1:mirbase
Length = 141
Score = 89.7 bits (45), Expect = 2e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 4 gccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggcatt 63
||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||
Sbjct: 43 gccctttttctgttgtactactggccaatcagaagagcagtgcaatattaaaagggcatt 102
Query: 64 ggctg 68
|||||
Sbjct: 103 ggctg 107
>25774_xtr-mir-130c:mirbase
Length = 71
Score = 87.7 bits (44), Expect = 9e-19
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 4 gccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggcatt 63
|||||||||||||||||||||||| | || | || |||||||||||||||||||||||||
Sbjct: 8 gccctttttctgttgtactactggaatttgtaattagcagtgcaatattaaaagggcatt 67
Query: 64 ggct 67
||||
Sbjct: 68 ggct 71
>34293_dre-mir-130c-2:mirbase
Length = 81
Score = 83.8 bits (42), Expect = 1e-17
Identities = 62/66 (93%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 4 gccctttttctgttgtactactg-gcaattatgatgagcagtgcaatattaaaagggcat 62
||||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||
Sbjct: 13 gccctttttctgttgtactactgtgcagtca-gatgagcagtgcaatattaaaagggcat 71
Query: 63 tggctg 68
||||||
Sbjct: 72 tggctg 77
>34595_fru-mir-130:mirbase
Length = 79
Score = 73.8 bits (37), Expect = 1e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 4 gccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggcatt 63
||||||||||||||| || ||||| | | |||||||||||||||||||||||||||||
Sbjct: 15 gccctttttctgttgcaccactggacactgagatgagcagtgcaatattaaaagggcatt 74
Query: 64 ggctg 68
|||||
Sbjct: 75 ggctg 79
>34742_tni-mir-130:mirbase
Length = 74
Score = 69.9 bits (35), Expect = 2e-13
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 4 gccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggcatt 63
||||||||||||||| || ||||| | | |||||||||||||||||||||||||||||
Sbjct: 12 gccctttttctgttgcaccactggacactgagatgagcagtgcaatattaaaagggcatt 71
Query: 64 ggc 66
|||
Sbjct: 72 ggc 74
>25479_pma-mir-130a:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 1e-11
Identities = 65/74 (87%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 3 agccctttttctgttgtactactg---gcaattatgatgagcagtgcaatatt-aaaagg 58
|||||||||| ||||||||||||| || || || |||||||||||||||| ||||||
Sbjct: 13 agccctttttgtgttgtactactgtccgctatggtgctgagcagtgcaatattaaaaagg 72
Query: 59 gcattggctggcag 72
||||||||||||||
Sbjct: 73 gcattggctggcag 86
>33211_bta-mir-130a:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggctg 68
||||||||||| ||||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggctg 82
>25772_xtr-mir-130a:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
>25949_gga-mir-130c:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 58 agcagtgcaatgttaaaagggcattggc 85
>26461_tgu-mir-130c:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 79 agcagtgcaatgttaaaagggcattggc 106
>27728_mml-mir-130a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>28211_mne-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>28303_ggo-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>28442_hsa-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>30090_ppa-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>30218_ptr-mir-130a:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcattggc 79
>30827_ppy-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>31486_oan-mir-130b:mirbase
Length = 129
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 79 agcagtgcaatgttaaaagggcattggc 106
>33979_ssc-mir-130a:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 48 agcagtgcaatgttaaaagggcattggc 75
>34289_dre-mir-130a-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcattggc 79
>34290_dre-mir-130a-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcattggc 79
>27380_mdo-mir-130a:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggctg 68
||||||||||| | ||||||||||||||||
Sbjct: 47 agcagtgcaatgtaaaaagggcattggctg 76
>31487_oan-mir-130c:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 38 gagcagtgcaatattaaaagggcattggctggc 70
|||||||||||| ||||||||||| |||||||
Sbjct: 50 gagcagtgcaatggtaaaagggcatcggctggc 82
>31856_mmu-mir-130a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gagcagtgcaatattaaaagggcat 62
|||||||||||| ||||||||||||
Sbjct: 39 gagcagtgcaatgttaaaagggcat 63
>32731_rno-mir-130a:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gagcagtgcaatattaaaagggcat 62
|||||||||||| ||||||||||||
Sbjct: 52 gagcagtgcaatgttaaaagggcat 76
>33089_rno-mir-3590:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 38 gagcagtgcaatattaaaagggcat 62
|||||||||||| ||||||||||||
Sbjct: 30 gagcagtgcaatgttaaaagggcat 6
>33090_rno-mir-3590:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 38 gagcagtgcaatattaaaagggcat 62
|||||||||||| ||||||||||||
Sbjct: 30 gagcagtgcaatgttaaaagggcat 6
>26698_cfa-mir-130a:mirbase
Length = 62
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcat 62
||||||||||| ||||||||||||
Sbjct: 39 agcagtgcaatgttaaaagggcat 62
>27022_eca-mir-130a:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcat 62
||||||||||| ||||||||||||
Sbjct: 41 agcagtgcaatgttaaaagggcat 64
