miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25956_gga-mir-135a-3:mirbase
Length = 96
Score = 133 bits (67), Expect = 2e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 1 cctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtagg 60
||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 2 cctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtagg 61
Query: 61 gcgaaaagccatgggctac 79
|||||||||||||||||||
Sbjct: 62 gcgaaaagccatgggctac 80
>27737_mml-mir-135b:mirbase
Length = 97
Score = 109 bits (55), Expect = 3e-25
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
||||||||||| |||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 3 ctctgctgtggcctatggcttttcattcctatgtgattgctgtcccaaactcatgtaggg 62
Query: 62 cgaaaagccatgggctaca 80
| |||||||||||||||||
Sbjct: 63 ctaaaagccatgggctaca 81
>28451_hsa-mir-135b:mirbase
Length = 97
Score = 109 bits (55), Expect = 3e-25
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
||||||||||| |||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 3 ctctgctgtggcctatggcttttcattcctatgtgattgctgtcccaaactcatgtaggg 62
Query: 62 cgaaaagccatgggctaca 80
| |||||||||||||||||
Sbjct: 63 ctaaaagccatgggctaca 81
>30226_ptr-mir-135b:mirbase
Length = 96
Score = 109 bits (55), Expect = 3e-25
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
||||||||||| |||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 3 ctctgctgtggcctatggcttttcattcctatgtgattgctgtcccaaactcatgtaggg 62
Query: 62 cgaaaagccatgggctaca 80
| |||||||||||||||||
Sbjct: 63 ctaaaagccatgggctaca 81
>30836_ppy-mir-135b:mirbase
Length = 97
Score = 109 bits (55), Expect = 3e-25
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
||||||||||| |||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 3 ctctgctgtggcctatggcttttcattcctatgtgattgctgtcccaaactcatgtaggg 62
Query: 62 cgaaaagccatgggctaca 80
| |||||||||||||||||
Sbjct: 63 ctaaaagccatgggctaca 81
>32738_rno-mir-135b:mirbase
Length = 97
Score = 109 bits (55), Expect = 3e-25
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
||||||||||| |||||||||| ||||||||||||||||| | ||||||||||||||||
Sbjct: 3 ctctgctgtggcctatggcttttcattcctatgtgattgctgttccgaactcatgtaggg 62
Query: 62 cgaaaagccatgggctaca 80
| |||||||||||||||||
Sbjct: 63 ctaaaagccatgggctaca 81
>27384_mdo-mir-135b:mirbase
Length = 100
Score = 101 bits (51), Expect = 8e-23
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
||||||||||| |||||||||| ||||||||||||||||| | || |||||||||||||
Sbjct: 5 ctctgctgtggcctatggcttttcattcctatgtgattgctgttcccaactcatgtaggg 64
Query: 62 cgaaaagccatgggctaca 80
| |||||||||||||||||
Sbjct: 65 ctaaaagccatgggctaca 83
>31865_mmu-mir-135b:mirbase
Length = 97
Score = 101 bits (51), Expect = 8e-23
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 3 ctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtaggg 62
Query: 62 cgaaaagccatgggctaca 80
| |||||||||||||||||
Sbjct: 63 ctaaaagccatgggctaca 81
>27031_eca-mir-135b:mirbase
Length = 89
Score = 93.7 bits (47), Expect = 2e-20
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
||||||||||| |||||||||| ||||||||||||||||| | | |||||||||||||
Sbjct: 2 ctctgctgtggcctatggcttttcattcctatgtgattgctgttctaaactcatgtaggg 61
Query: 62 cgaaaagccatgggctaca 80
| |||||||||||||||||
Sbjct: 62 ctaaaagccatgggctaca 80
>33220_bta-mir-135b:mirbase
Length = 95
Score = 93.7 bits (47), Expect = 2e-20
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
||||||||||| |||||||||| |||||||||||||| || | || |||||||||||||
Sbjct: 1 ctctgctgtggcctatggcttttcattcctatgtgattactgttccaaactcatgtaggg 60
Query: 62 cgaaaagccatgggctaca 80
| |||||||||||||||||
Sbjct: 61 ctaaaagccatgggctaca 79
>31492_oan-mir-135b:mirbase
Length = 114
Score = 89.7 bits (45), Expect = 3e-19
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 18 ctctgctgtggcctatggctttttattcctatgtgattgctgctttgaactcatgtaggg 77
Query: 62 cgaaaagccatgggctacacagagg 86
| |||||||||||||||| |||||
Sbjct: 78 ctgaaagccatgggctacagagagg 102
>26708_cfa-mir-135b:mirbase
Length = 89
Score = 85.7 bits (43), Expect = 5e-18
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
||||||||||| |||||||||| ||||||||||||||||| | | || ||||||||||
Sbjct: 2 ctctgctgtggcctatggcttttcattcctatgtgattgctgtttctaattcatgtaggg 61
Query: 62 cgaaaagccatgggctaca 80
| |||||||||||||||||
Sbjct: 62 ctaaaagccatgggctaca 80
>25781_xtr-mir-135-2:mirbase
Length = 88
Score = 69.9 bits (35), Expect = 3e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 4 ctgctgtggtttatggctttttattcctatgtgattgctttcc 46
|||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 5 ctgctgaggtatatggctttttattcctatgtgattgctttcc 47
>25487_pma-mir-135a:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 7 ctgtggtttatggctttttattcctatgtgattgctt 43
||||| |||||||||||||||||||||||||||||||
Sbjct: 7 ctgtgctttatggctttttattcctatgtgattgctt 43
>34302_dre-mir-135c-1:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 5 tgctgtggtttatggctttttattcctatgtgatt 39
||||||| ||||||||||| |||||||||||||||
Sbjct: 1 tgctgtgttttatggctttctattcctatgtgatt 35
>34303_dre-mir-135c-2:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 5 tgctgtggtttatggctttttattcctatgtgatt 39
||||||| ||||||||||| |||||||||||||||
Sbjct: 1 tgctgtgttttatggctttctattcctatgtgatt 35
>34598_fru-mir-135a:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 5 tgctgtggtttatggctttttattcctatgtgatt 39
||||||| ||||||||||| |||||||||||||||
Sbjct: 1 tgctgtgttttatggctttctattcctatgtgatt 35
>34745_tni-mir-135a:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 5 tgctgtggtttatggctttttattcctatgtgatt 39
||||||| ||||||||||| |||||||||||||||
Sbjct: 1 tgctgtgttttatggctttctattcctatgtgatt 35
>25780_xtr-mir-135-1:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>25955_gga-mir-135a-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>26465_tgu-mir-135a-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 9 tttatggctttttattcctatgtgat 34
>27030_eca-mir-135a-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>27513_age-mir-135-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>27575_lla-mir-135-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>27736_mml-mir-135a-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>28306_ggo-mir-135:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>28450_hsa-mir-135a-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>30094_ppa-mir-135-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>30225_ptr-mir-135a-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>30834_ppy-mir-135:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>31491_oan-mir-135a:mirbase
Length = 109
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 27 tttatggctttttattcctatgtgat 52
>31864_mmu-mir-135a-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>32737_rno-mir-135a:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>33219_bta-mir-135a-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>33987_ssc-mir-135-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>25954_gga-mir-135a-1:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 15 tatggctttttattcctatgtgatt 39
>26467_tgu-mir-135b:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 11 tatggctttttattcctatgtgatt 35
>26705_cfa-mir-135a-1:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>26706_cfa-mir-135a-2:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 ttatggctttttattcctatgtgat 38
|||||||||||||||||||||||||
Sbjct: 1 ttatggctttttattcctatgtgat 25
>26707_cfa-mir-135a-2:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 ttatggctttttattcctatgtgat 38
|||||||||||||||||||||||||
Sbjct: 1 ttatggctttttattcctatgtgat 25
>27029_eca-mir-135a:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 2 tatggctttttattcctatgtgatt 26
>27383_mdo-mir-135a:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 ttatggctttttattcctatgtgat 38
|||||||||||||||||||||||||
Sbjct: 22 ttatggctttttattcctatgtgat 46
>27512_age-mir-135-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>27574_lla-mir-135-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>27735_mml-mir-135a-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>28449_hsa-mir-135a-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>30093_ppa-mir-135-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>30224_ptr-mir-135a-1:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>30835_ppy-mir-135a-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>31863_mmu-mir-135a-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>33218_bta-mir-135a-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>33986_ssc-mir-135-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>34304_dre-mir-135c-3:mirbase
Length = 127
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 ctgtggtttatggctttttattcctatgtgatt 39
||||| ||||||||||| |||||||||||||||
Sbjct: 28 ctgtgctttatggctttctattcctatgtgatt 60
>34300_dre-mir-135a:mirbase
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttatggctttttattcctatgtga 37
||||||||||||||||||||||||
Sbjct: 15 ttatggctttttattcctatgtga 38
>25488_pma-mir-135b:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
|||||||||||||||||| |||||
Sbjct: 12 tatggctttttattcctacgtgat 35
>34301_dre-mir-135b:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctat 33
|||||||||||||||||||
Sbjct: 13 tatggctttttattcctat 31
>34599_fru-mir-135b:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctat 33
|||||||||||||||||||
Sbjct: 16 tatggctttttattcctat 34
>34746_tni-mir-135b:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctat 33
|||||||||||||||||||
Sbjct: 14 tatggctttttattcctat 32
