miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25959_gga-mir-138-1:mirbase
Length = 96
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 4 gtgcaacagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaac 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gtgcagcagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaac 74
Query: 64 accagggt 71
||||||||
Sbjct: 75 accagggt 82
>33223_bta-mir-138-1:mirbase
Length = 97
Score = 101 bits (51), Expect = 6e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccagg 69
|||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 20 cagctggtgttgtgaatcaggccgtcgccaatcagagaacggctacttcacaacaccagg 79
Query: 70 gtc 72
|||
Sbjct: 80 gtc 82
>32741_rno-mir-138-1:mirbase
Length = 99
Score = 95.6 bits (48), Expect = 4e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 9 acagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccag 68
|||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct: 21 acagctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccag 80
Query: 69 ggtc 72
||||
Sbjct: 81 ggtc 84
>25785_xtr-mir-138:mirbase
Length = 85
Score = 91.7 bits (46), Expect = 6e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccagg 69
||||||||||||||||||||||||| |||| || || |||||||||||||||||||||||
Sbjct: 14 cagctggtgttgtgaatcaggccgtgaccactcagaaaacggctacttcacaacaccagg 73
Query: 70 gt 71
||
Sbjct: 74 gt 75
>26711_cfa-mir-138a:mirbase
Length = 62
Score = 91.7 bits (46), Expect = 6e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 11 agctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccaggg 70
|||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct: 1 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccaggg 60
Query: 71 tc 72
||
Sbjct: 61 tc 62
>31868_mmu-mir-138-1:mirbase
Length = 99
Score = 91.7 bits (46), Expect = 6e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 9 acagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccag 68
|||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct: 21 acagctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccag 80
Query: 69 gg 70
||
Sbjct: 81 gg 82
>28454_hsa-mir-138-1:mirbase
Length = 99
Score = 89.7 bits (45), Expect = 2e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccagg 69
||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 22 cagctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccagg 81
Query: 70 g 70
|
Sbjct: 82 g 82
>27035_eca-mir-138-2:mirbase
Length = 59
Score = 85.7 bits (43), Expect = 4e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 11 agctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccagg 69
|||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 1 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccagg 59
>31495_oan-mir-138-1:mirbase
Length = 137
Score = 73.8 bits (37), Expect = 1e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttc 58
|||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct: 89 cagctggtgttgtgaatcaggccgtcgccaatctgagaacggctacttc 137
>25491_pma-mir-138a:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>25960_gga-mir-138-2:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>26470_tgu-mir-138-2:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 10 cagctggtgttgtgaatcaggccg 33
>27034_eca-mir-138:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 9 cagctggtgttgtgaatcaggccg 32
>27386_mdo-mir-138:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>27740_mml-mir-138:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 9 cagctggtgttgtgaatcaggccg 32
>28455_hsa-mir-138-2:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 9 cagctggtgttgtgaatcaggccg 32
>30229_ptr-mir-138:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>30839_ppy-mir-138-2:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 9 cagctggtgttgtgaatcaggccg 32
>31496_oan-mir-138-2:mirbase
Length = 115
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 26 cagctggtgttgtgaatcaggccg 49
>31869_mmu-mir-138-2:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 1 cagctggtgttgtgaatcaggccg 24
>32742_rno-mir-138-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>33224_bta-mir-138-2:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>34307_dre-mir-138:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 10 cagctggtgttgtgaatcaggccg 33
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cggctacttcacaacaccagggt 71
|||||| ||||||||||||||||
Sbjct: 56 cggctatttcacaacaccagggt 78
>34601_fru-mir-138:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 5 cagctggtgttgtgaatcaggccg 28
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cggctacttcacaacaccagggt 71
|||||| ||||||||||||||||
Sbjct: 51 cggctatttcacaacaccagggt 73
>34748_tni-mir-138:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 5 cagctggtgttgtgaatcaggccg 28
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cggctacttcacaacaccagggt 71
|||||| ||||||||||||||||
Sbjct: 51 cggctatttcacaacaccagggt 73
>25492_pma-mir-138b:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggc 31
||||||||||||||||||||||
Sbjct: 14 cagctggtgttgtgaatcaggc 35
>26712_cfa-mir-138b:mirbase
Length = 69
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 agctggtgttgtgaatcaggccg 33
|||||||||||||||||| ||||
Sbjct: 1 agctggtgttgtgaatcatgccg 23
