miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25960_gga-mir-138-2:mirbase
Length = 83
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 3 gttgctgcagctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctat 62
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 1 gttgctgcagctggtgttgtgaatcaggccgacggcaagcgcttcctactatccggctat 60
Query: 63 ttcactacaccagggttgcatca 85
|||||||||||||||||||||||
Sbjct: 61 ttcactacaccagggttgcatca 83
>31496_oan-mir-138-2:mirbase
Length = 115
Score = 121 bits (61), Expect = 9e-29
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 5 tgctgcagctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctattt 64
||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||
Sbjct: 21 tgctgcagctggtgttgtgaatcaggccgacgagcagcgagtcctaatacccggctattt 80
Query: 65 cactacaccagggttgcatcataccactc 93
|||||||||||||||||||||||||||||
Sbjct: 81 cactacaccagggttgcatcataccactc 109
>27386_mdo-mir-138:mirbase
Length = 83
Score = 101 bits (51), Expect = 9e-23
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 3 gttgctgcagctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctat 62
||||||||||||||||||||||||||||||||| | ||| | ||||| | ||||||||
Sbjct: 1 gttgctgcagctggtgttgtgaatcaggccgacaagcagctcatcctattacccggctat 60
Query: 63 ttcactacaccagggttgcatca 85
|||||||||||||||||||||||
Sbjct: 61 ttcactacaccagggttgcatca 83
>27740_mml-mir-138:mirbase
Length = 84
Score = 101 bits (51), Expect = 9e-23
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 3 gttgctgcagctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctat 62
||||||||||||||||||||||||||||||||||| ||||| |||| | ||||||||
Sbjct: 2 gttgctgcagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctat 61
Query: 63 ttcactacaccagggttgcatca 85
||||| |||||||||||||||||
Sbjct: 62 ttcacgacaccagggttgcatca 84
>28455_hsa-mir-138-2:mirbase
Length = 84
Score = 101 bits (51), Expect = 9e-23
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 3 gttgctgcagctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctat 62
||||||||||||||||||||||||||||||||||| ||||| |||| | ||||||||
Sbjct: 2 gttgctgcagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctat 61
Query: 63 ttcactacaccagggttgcatca 85
||||| |||||||||||||||||
Sbjct: 62 ttcacgacaccagggttgcatca 84
>30229_ptr-mir-138:mirbase
Length = 83
Score = 101 bits (51), Expect = 9e-23
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 3 gttgctgcagctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctat 62
||||||||||||||||||||||||||||||||||| ||||| |||| | ||||||||
Sbjct: 1 gttgctgcagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctat 60
Query: 63 ttcactacaccagggttgcatca 85
||||| |||||||||||||||||
Sbjct: 61 ttcacgacaccagggttgcatca 83
>30839_ppy-mir-138-2:mirbase
Length = 84
Score = 101 bits (51), Expect = 9e-23
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 3 gttgctgcagctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctat 62
||||||||||||||||||||||||||||||||||| ||||| |||| | ||||||||
Sbjct: 2 gttgctgcagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctat 61
Query: 63 ttcactacaccagggttgcatca 85
||||| |||||||||||||||||
Sbjct: 62 ttcacgacaccagggttgcatca 84
>33224_bta-mir-138-2:mirbase
Length = 83
Score = 101 bits (51), Expect = 9e-23
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 3 gttgctgcagctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctat 62
||||||||||||||||||||||||||||||||||| ||||| |||| | ||||||||
Sbjct: 1 gttgctgcagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctat 60
Query: 63 ttcactacaccagggttgcatca 85
||||| |||||||||||||||||
Sbjct: 61 ttcacgacaccagggttgcatca 83
>27034_eca-mir-138:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 3 gttgctgcagctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctat 62
||||||||||||||||||||||||||||||||||| || || |||| | ||||||||
Sbjct: 2 gttgctgcagctggtgttgtgaatcaggccgacgagcagtgcatcctcttacccggctat 61
Query: 63 ttcactacaccagggttgcatca 85
||||| |||||||||||||||||
Sbjct: 62 ttcacgacaccagggttgcatca 84
>32742_rno-mir-138-2:mirbase
Length = 82
Score = 87.7 bits (44), Expect = 1e-18
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 3 gttgctgcagctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctat 62
||||||||||||||||||||||||||||||||||| | ||| |||| | ||||||||
Sbjct: 1 gttgctgcagctggtgttgtgaatcaggccgacgagcaacgcatcctcttacccggctat 60
Query: 63 ttcactacaccagggttgca 82
||||| ||||||||||||||
Sbjct: 61 ttcacgacaccagggttgca 80
>34601_fru-mir-138:mirbase
Length = 79
Score = 81.8 bits (41), Expect = 8e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 6 gctgcagctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctatttc 65
||||||||||||||||||||||||||||| |||| | | ||||| || |||||||||||
Sbjct: 1 gctgcagctggtgttgtgaatcaggccgatgacagacacctcctataagccggctatttc 60
Query: 66 actacaccagggt 78
|| ||||||||||
Sbjct: 61 acaacaccagggt 73
>34748_tni-mir-138:mirbase
Length = 79
Score = 81.8 bits (41), Expect = 8e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 6 gctgcagctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctatttc 65
||||||||||||||||||||||||||||| |||| | | ||||| || |||||||||||
Sbjct: 1 gctgcagctggtgttgtgaatcaggccgatgacagacacctcctagaagccggctatttc 60
Query: 66 actacaccagggt 78
|| ||||||||||
Sbjct: 61 acaacaccagggt 73
>31869_mmu-mir-138-2:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctatttcacta 69
|||||||||||||||||||||||||||| ||||| |||| | ||||||||||||| |
Sbjct: 1 cagctggtgttgtgaatcaggccgacgagcagcgcatcctcttacccggctatttcacga 60
Query: 70 caccagggttg 80
|||||||||||
Sbjct: 61 caccagggttg 71
>26712_cfa-mir-138b:mirbase
Length = 69
Score = 65.9 bits (33), Expect = 5e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 11 agctggtgttgtgaatcaggccgacgacaagcgcttcctacaatccggctatttcactac 70
|||||||||||||||||| |||||||| ||||| |||| | ||||||||||||| ||
Sbjct: 1 agctggtgttgtgaatcatgccgacgagcagcgcatcctcttacccggctatttcacgac 60
Query: 71 accagggtt 79
|||||||||
Sbjct: 61 accagggtt 69
>34307_dre-mir-138:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 tgctgcagctggtgttgtgaatcaggccga 34
||||||||||||||||||||||||||||||
Sbjct: 5 tgctgcagctggtgttgtgaatcaggccga 34
>25491_pma-mir-138a:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcagctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>25785_xtr-mir-138:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcagctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||||
Sbjct: 13 gcagctggtgttgtgaatcaggccg 37
>25959_gga-mir-138-1:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcagctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||||
Sbjct: 20 gcagctggtgttgtgaatcaggccg 44
>28454_hsa-mir-138-1:mirbase
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcagctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||||
Sbjct: 21 gcagctggtgttgtgaatcaggccg 45
>31495_oan-mir-138-1:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcagctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||||
Sbjct: 88 gcagctggtgttgtgaatcaggccg 112
>33223_bta-mir-138-1:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcagctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||||
Sbjct: 19 gcagctggtgttgtgaatcaggccg 43
>26469_tgu-mir-138-1:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 10 cagctggtgttgtgaatcaggccg 33
>31868_mmu-mir-138-1:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 22 cagctggtgttgtgaatcaggccg 45
>32741_rno-mir-138-1:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 22 cagctggtgttgtgaatcaggccg 45
>25492_pma-mir-138b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gcagctggtgttgtgaatcaggc 31
|||||||||||||||||||||||
Sbjct: 13 gcagctggtgttgtgaatcaggc 35
>26711_cfa-mir-138a:mirbase
Length = 62
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 agctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||
Sbjct: 1 agctggtgttgtgaatcaggccg 23
>27035_eca-mir-138-2:mirbase
Length = 59
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 agctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||
Sbjct: 1 agctggtgttgtgaatcaggccg 23
