miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27387_mdo-mir-139:mirbase
Length = 69
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||||||||||||||||||| |||| |||||||||| | |||||||||
Sbjct: 1 tgtattctacagtgcatgtgtctccagtgtgactaagggactggagatacagccctgttg 60
Query: 69 gaataaca 76
||||||||
Sbjct: 61 gaataaca 68
>27576_lla-mir-139:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>27741_mml-mir-139:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>27742_mml-mir-139:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>28456_hsa-mir-139:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>28457_hsa-mir-139:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>30096_ppa-mir-139:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>30840_ppy-mir-139:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>30841_ppy-mir-139:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>31870_mmu-mir-139:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>31871_mmu-mir-139:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>32743_rno-mir-139:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>32744_rno-mir-139:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>33989_ssc-mir-139:mirbase
Length = 68
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>34308_dre-mir-139:mirbase
Length = 69
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 8 ctgtattctacagtgcatgtgtctccagtgt 38
|||||||||||||||||||||||||||||||
Sbjct: 1 ctgtattctacagtgcatgtgtctccagtgt 31
>30230_ptr-mir-139:mirbase
Length = 67
Score = 60.0 bits (30), Expect = 3e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 ga 70
||
Sbjct: 62 ga 63
>25786_xtr-mir-139:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagt 36
||||||||||||||||||||||||||||
Sbjct: 1 tgtattctacagtgcatgtgtctccagt 28
>33225_bta-mir-139:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 2e-08
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 68
|||| ||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtactctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
Query: 69 gaataac 75
|| ||||
Sbjct: 62 gagtaac 68
>26713_cfa-mir-139:mirbase
Length = 57
Score = 50.1 bits (25), Expect = 3e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 15 ctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttggaa 71
|||||||||| |||||||||||||| | | | ||||||| |||||||||||||||
Sbjct: 1 ctacagtgcacgtgtctccagtgtggctccgaggctggagacgcggccctgttggaa 57
>27036_eca-mir-139:mirbase
Length = 63
Score = 50.1 bits (25), Expect = 3e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 14 tctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttgga 70
||||||||||| |||||||||||||| | | | ||||||| ||||||||||||||
Sbjct: 4 tctacagtgcacgtgtctccagtgtggctccgaggctggagacgcggccctgttgga 60
>27037_eca-mir-139:mirbase
Length = 63
Score = 50.1 bits (25), Expect = 3e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 14 tctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttgga 70
||||||||||| |||||||||||||| | | | ||||||| ||||||||||||||
Sbjct: 4 tctacagtgcacgtgtctccagtgtggctccgaggctggagacgcggccctgttgga 60
>31497_oan-mir-139:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 tgtattctacagtgcatgtgtctccag 35
|||| ||||||||||||||||||||||
Sbjct: 11 tgtagtctacagtgcatgtgtctccag 37
