miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25961_gga-mir-140:mirbase
Length = 95
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 cgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 cgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggt 70
Query: 61 agaaccacggac 72
||||||||||||
Sbjct: 71 agaaccacggac 82
>27743_mml-mir-140:mirbase
Length = 100
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 73
Query: 62 gaaccacggac 72
|||||||||||
Sbjct: 74 gaaccacggac 84
>27744_mml-mir-140:mirbase
Length = 100
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 73
Query: 62 gaaccacggac 72
|||||||||||
Sbjct: 74 gaaccacggac 84
>28458_hsa-mir-140:mirbase
Length = 100
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 73
Query: 62 gaaccacggac 72
|||||||||||
Sbjct: 74 gaaccacggac 84
>28459_hsa-mir-140:mirbase
Length = 100
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 73
Query: 62 gaaccacggac 72
|||||||||||
Sbjct: 74 gaaccacggac 84
>30231_ptr-mir-140:mirbase
Length = 100
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 73
Query: 62 gaaccacggac 72
|||||||||||
Sbjct: 74 gaaccacggac 84
>30842_ppy-mir-140:mirbase
Length = 100
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 73
Query: 62 gaaccacggac 72
|||||||||||
Sbjct: 74 gaaccacggac 84
>30843_ppy-mir-140:mirbase
Length = 100
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 73
Query: 62 gaaccacggac 72
|||||||||||
Sbjct: 74 gaaccacggac 84
>31498_oan-mir-140:mirbase
Length = 123
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 85
Query: 62 gaaccacggac 72
|||||||||||
Sbjct: 86 gaaccacggac 96
>33226_bta-mir-140:mirbase
Length = 94
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 67
Query: 62 gaaccacggac 72
|||||||||||
Sbjct: 68 gaaccacggac 78
>27388_mdo-mir-140:mirbase
Length = 70
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 6 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 60
Query: 66 cacggac 72
|||||||
Sbjct: 61 cacggac 67
>28214_mne-mir-140:mirbase
Length = 100
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtgtcctgccagtggttctaccctatggtaggttacgtcatgctgttctaccacagggta 73
Query: 62 gaaccacggac 72
|||||||||||
Sbjct: 74 gaaccacggac 84
>31872_mmu-mir-140:mirbase
Length = 70
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 6 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 60
Query: 66 cacggac 72
|||||||
Sbjct: 61 cacggac 67
>32745_rno-mir-140:mirbase
Length = 99
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 13 gtgtcctgccagtggttttaccctatggtaggttacatcatgctgttctaccacagggta 72
Query: 62 gaaccacggac 72
|||||||||||
Sbjct: 73 gaaccacggac 83
>33990_ssc-mir-140:mirbase
Length = 70
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 6 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 60
Query: 66 cacggac 72
|||||||
Sbjct: 61 cacggac 67
>25787_xtr-mir-140:mirbase
Length = 94
Score = 125 bits (63), Expect = 4e-30
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9 gtgtcctcccagtggttttaccctatggtaggttacgtcaggctgttctaccacagggta 68
Query: 62 gaaccacggac 72
|||||||||||
Sbjct: 69 gaaccacggac 79
>34309_dre-mir-140:mirbase
Length = 105
Score = 125 bits (63), Expect = 4e-30
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 73
Query: 62 gaaccacggac 72
|||||||||||
Sbjct: 74 gaaccacggac 84
>26714_cfa-mir-140:mirbase
Length = 61
Score = 121 bits (61), Expect = 7e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 11 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 60
Query: 71 a 71
|
Sbjct: 61 a 61
>27038_eca-mir-140:mirbase
Length = 61
Score = 121 bits (61), Expect = 7e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 10 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 60
Query: 70 g 70
|
Sbjct: 61 g 61
>27039_eca-mir-140:mirbase
Length = 61
Score = 121 bits (61), Expect = 7e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 10 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 60
Query: 70 g 70
|
Sbjct: 61 g 61
>34602_fru-mir-140:mirbase
Length = 67
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 11 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 70
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 3 cagtggttttaccctatggtaggtgacatcatgctgttctaccacagggtagaaccacgg 62
Query: 71 ac 72
||
Sbjct: 63 ac 64
>34749_tni-mir-140:mirbase
Length = 67
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 11 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 70
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 3 cagtggttttaccctatggtaggtgacatcatgctgttctaccacagggtagaaccacgg 62
Query: 71 ac 72
||
Sbjct: 63 ac 64
>25493_pma-mir-140:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 cagtggttttaccctatggtag 32
||||||||||||||||||||||
Sbjct: 10 cagtggttttaccctatggtag 31
