miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25962_gga-mir-142:mirbase
Length = 88
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 65
Query: 61 actttatggat 71
|||||||||||
Sbjct: 66 actttatggat 76
>25963_gga-mir-142:mirbase
Length = 88
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 65
Query: 61 actttatggat 71
|||||||||||
Sbjct: 66 actttatggat 76
>27746_mml-mir-142:mirbase
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 6 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 64
Query: 61 actttatggat 71
|||||||||||
Sbjct: 65 actttatggat 75
>27747_mml-mir-142:mirbase
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 6 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 64
Query: 61 actttatggat 71
|||||||||||
Sbjct: 65 actttatggat 75
>28461_hsa-mir-142:mirbase
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 6 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 64
Query: 61 actttatggat 71
|||||||||||
Sbjct: 65 actttatggat 75
>28462_hsa-mir-142:mirbase
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 6 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 64
Query: 61 actttatggat 71
|||||||||||
Sbjct: 65 actttatggat 75
>30234_ptr-mir-142:mirbase
Length = 86
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 6 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 64
Query: 61 actttatggat 71
|||||||||||
Sbjct: 65 actttatggat 75
>30845_ppy-mir-142:mirbase
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 6 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 64
Query: 61 actttatggat 71
|||||||||||
Sbjct: 65 actttatggat 75
>30846_ppy-mir-142:mirbase
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 6 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 64
Query: 61 actttatggat 71
|||||||||||
Sbjct: 65 actttatggat 75
>32747_rno-mir-142:mirbase
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 6 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 64
Query: 61 actttatggat 71
|||||||||||
Sbjct: 65 actttatggat 75
>32748_rno-mir-142:mirbase
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 6 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 64
Query: 61 actttatggat 71
|||||||||||
Sbjct: 65 actttatggat 75
>33228_bta-mir-142:mirbase
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 6 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 64
Query: 61 actttatggat 71
|||||||||||
Sbjct: 65 actttatggat 75
>33991_ssc-mir-142:mirbase
Length = 80
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 2 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 60
Query: 61 actttatggat 71
|||||||||||
Sbjct: 61 actttatggat 71
>33992_ssc-mir-142:mirbase
Length = 80
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 2 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 60
Query: 61 actttatggat 71
|||||||||||
Sbjct: 61 actttatggat 71
>27390_mdo-mir-142:mirbase
Length = 74
Score = 107 bits (54), Expect = 1e-24
Identities = 67/70 (95%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 2 gcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttccta 61
|||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct: 1 gcagtcacccataaagtagaaagcactact-aacagcaatgtagggtgtagtgtttccta 59
Query: 62 ctttatggat 71
||||||||||
Sbjct: 60 ctttatggat 69
>27041_eca-mir-142:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 62/64 (96%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 8 acccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactttat 67
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcctactttat 59
Query: 68 ggat 71
||||
Sbjct: 60 ggat 63
>27042_eca-mir-142:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 62/64 (96%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 8 acccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactttat 67
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcctactttat 59
Query: 68 ggat 71
||||
Sbjct: 60 ggat 63
>31874_mmu-mir-142:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 62/64 (96%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 8 acccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactttat 67
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcctactttat 59
Query: 68 ggat 71
||||
Sbjct: 60 ggat 63
>31875_mmu-mir-142:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 62/64 (96%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 8 acccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactttat 67
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcctactttat 59
Query: 68 ggat 71
||||
Sbjct: 60 ggat 63
>26716_cfa-mir-142:mirbase
Length = 63
Score = 101 bits (51), Expect = 6e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 cccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactttatg 68
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 1 cccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcctactttatg 59
Query: 69 gat 71
|||
Sbjct: 60 gat 62
>31499_oan-mir-142:mirbase
Length = 110
Score = 101 bits (51), Expect = 6e-23
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
|||||||| |||||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 19 tgcagtcatccataaagtagaaagcactactaa-cagcgctgtagggtgtagtgtttcct 77
Query: 61 actttatggat 71
|||||||||||
Sbjct: 78 actttatggat 88
>25666_xla-mir-142:mirbase
Length = 86
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||||
Sbjct: 4 tgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcct 63
Query: 61 actttatggat 71
|||||||||||
Sbjct: 64 actttatggat 74
>25788_xtr-mir-142-1:mirbase
Length = 86
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||||
Sbjct: 4 tgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcct 63
Query: 61 actttatggat 71
|||||||||||
Sbjct: 64 actttatggat 74
>25789_xtr-mir-142-1:mirbase
Length = 86
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||||
Sbjct: 4 tgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcct 63
Query: 61 actttatggat 71
|||||||||||
Sbjct: 64 actttatggat 74
>25790_xtr-mir-142-2:mirbase
Length = 86
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||||
Sbjct: 4 tgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcct 63
Query: 61 actttatggat 71
|||||||||||
Sbjct: 64 actttatggat 74
>25791_xtr-mir-142-2:mirbase
Length = 86
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||||
Sbjct: 4 tgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcct 63
Query: 61 actttatggat 71
|||||||||||
Sbjct: 64 actttatggat 74
>34311_dre-mir-142a:mirbase
Length = 91
Score = 77.8 bits (39), Expect = 9e-16
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
|||||||| |||||||||||||||||||||||||| | | || ||||||||||||||
Sbjct: 8 tgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtttcct 67
Query: 61 actttatggat 71
|||||||||||
Sbjct: 68 actttatggat 78
>34312_dre-mir-142a:mirbase
Length = 91
Score = 77.8 bits (39), Expect = 9e-16
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
|||||||| |||||||||||||||||||||||||| | | || ||||||||||||||
Sbjct: 8 tgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtttcct 67
Query: 61 actttatggat 71
|||||||||||
Sbjct: 68 actttatggat 78
>34313_dre-mir-142b:mirbase
Length = 86
Score = 77.8 bits (39), Expect = 9e-16
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||| ||||||||||| ||||||||||||| | || || ||||||||||||||
Sbjct: 5 tgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtttcct 64
Query: 61 actttatggat 71
|||||||||||
Sbjct: 65 actttatggat 75
>34604_fru-mir-142b:mirbase
Length = 86
Score = 77.8 bits (39), Expect = 9e-16
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 5 gtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactt 64
||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 9 gtcacccataaagtagaaagcactactaaactattctacacagtgtagtgtttcctactt 68
Query: 65 tatggat 71
|||||||
Sbjct: 69 tatggat 75
>34751_tni-mir-142b:mirbase
Length = 86
Score = 77.8 bits (39), Expect = 9e-16
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 5 gtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactt 64
||||||||||||||||||||||||||||||| | | || ||||||||||||||||||
Sbjct: 9 gtcacccataaagtagaaagcactactaaacgtctttacacagtgtagtgtttcctactt 68
Query: 65 tatggat 71
|||||||
Sbjct: 69 tatggat 75
>34750_tni-mir-142a:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 2e-13
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
|||||||| |||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 7 tgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtttcct 66
Query: 61 actttatggat 71
|||||||||||
Sbjct: 67 actttatggat 77
>34603_fru-mir-142a:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 1e-11
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactg-cagggtgtagtgtttcc 59
|||||||| |||||||||||||||||||||||||| | || || |||||||||||||
Sbjct: 5 tgcagtcatccataaagtagaaagcactactaaac-tctttgccacagtgtagtgtttcc 63
Query: 60 tactttatggat 71
||||||||||||
Sbjct: 64 tactttatggat 75
