miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25965_gga-mir-146a:mirbase
Length = 99
Score = 115 bits (58), Expect = 4e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 3 ctcagctttgagaactgaattccatgggttgtaattgaatctgctgtcagacccatgggg 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8 ctcagctttgagaactgaattccatgggttgtaattgaatcctttgtcagacccatgggg 67
Query: 63 ctcagttctt 72
||||||||||
Sbjct: 68 ctcagttctt 77
>31503_oan-mir-146a:mirbase
Length = 129
Score = 75.8 bits (38), Expect = 4e-15
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 ctcagctttgagaactgaattccatgggttgtaattgaatctgctgtcagacccatgggg 62
|||||||||||||||||||||||| ||||||| |||| | || ||| ||||||| |||||
Sbjct: 23 ctcagctttgagaactgaattccacgggttgtgattgcaact-ctgacagacccgtgggg 81
Query: 63 ctcagttctt 72
||||||||||
Sbjct: 82 ctcagttctt 91
>27751_mml-mir-146a:mirbase
Length = 99
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 ctcagctttgagaactgaattccatgggttgt 34
||||||||||||||||||||||||||||||||
Sbjct: 13 ctcagctttgagaactgaattccatgggttgt 44
>28466_hsa-mir-146a:mirbase
Length = 99
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 ctcagctttgagaactgaattccatgggttgt 34
||||||||||||||||||||||||||||||||
Sbjct: 13 ctcagctttgagaactgaattccatgggttgt 44
>30238_ptr-mir-146a:mirbase
Length = 98
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 ctcagctttgagaactgaattccatgggttgt 34
||||||||||||||||||||||||||||||||
Sbjct: 12 ctcagctttgagaactgaattccatgggttgt 43
>30850_ppy-mir-146a:mirbase
Length = 99
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 ctcagctttgagaactgaattccatgggttgt 34
||||||||||||||||||||||||||||||||
Sbjct: 13 ctcagctttgagaactgaattccatgggttgt 44
>33996_ssc-mir-146a:mirbase
Length = 78
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 ctcagctttgagaactgaattccatgggttgt 34
||||||||||||||||||||||||||||||||
Sbjct: 3 ctcagctttgagaactgaattccatgggttgt 34
>27394_mdo-mir-146a:mirbase
Length = 91
Score = 61.9 bits (31), Expect = 5e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 tcagctttgagaactgaattccatgggttgt 34
|||||||||||||||||||||||||||||||
Sbjct: 8 tcagctttgagaactgaattccatgggttgt 38
>27046_eca-mir-146a:mirbase
Length = 65
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 6 agctttgagaactgaattccatgggttgt 34
|||||||||||||||||||||||||||||
Sbjct: 1 agctttgagaactgaattccatgggttgt 29
>33232_bta-mir-146a:mirbase
Length = 99
Score = 56.0 bits (28), Expect = 3e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 ctcagctttgagaactgaattccatgggttgt 34
||||||||||||||||||||||||| ||||||
Sbjct: 13 ctcagctttgagaactgaattccataggttgt 44
>25795_xtr-mir-146:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ttctcagctttgagaactgaattccatgggttgt 34
|||| |||||||||||||||||||||| ||||||
Sbjct: 8 ttcttagctttgagaactgaattccataggttgt 41
>32752_rno-mir-146a:mirbase
Length = 95
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 ctcagctttgagaactgaattccatgggtt 32
||||||| ||||||||||||||||||||||
Sbjct: 9 ctcagctctgagaactgaattccatgggtt 38
>26720_cfa-mir-146a:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgagaactgaattccatgggttgt 34
||||||||||||||||||||||||
Sbjct: 1 tgagaactgaattccatgggttgt 24
>31879_mmu-mir-146a:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 agctttgagaactgaattccatgggtt 32
|||| ||||||||||||||||||||||
Sbjct: 1 agctctgagaactgaattccatgggtt 27
>25966_gga-mir-146b:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 gctttgagaactgaattccat 27
|||||||||||||||||||||
Sbjct: 15 gctttgagaactgaattccat 35
>25967_gga-mir-146c-1:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 cagctttgagaactgaattccatgg 29
||||| |||||||||||||||||||
Sbjct: 28 cagctctgagaactgaattccatgg 52
>25968_gga-mir-146c-2:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 cagctttgagaactgaattccatgg 29
||||| |||||||||||||||||||
Sbjct: 28 cagctctgagaactgaattccatgg 52
>26475_tgu-mir-146a:mirbase
Length = 116
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 cagctttgagaactgaattccatgg 29
||||| |||||||||||||||||||
Sbjct: 23 cagctctgagaactgaattccatgg 47
>34319_dre-mir-146b-1:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 gctttgagaactgaattccatgggt 31
|||||||||||||||||||| ||||
Sbjct: 8 gctttgagaactgaattccaagggt 32
>34320_dre-mir-146b-2:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 gctttgagaactgaattccatgggt 31
|||||||||||||||||||| ||||
Sbjct: 8 gctttgagaactgaattccaagggt 32
>25796_xtr-mir-146b:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 tgagaactgaattccatgg 29
|||||||||||||||||||
Sbjct: 21 tgagaactgaattccatgg 39
