miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26558_tgu-mir-2957:mirbase
Length = 74
Score = 147 bits (74), Expect = 2e-36
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 35 ccggaagcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacag 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 ccggaagcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacag 15
Query: 95 aactttgtctccgg 108
||||||||||||||
Sbjct: 14 aactttgtctccgg 1
>25971_gga-mir-148a:mirbase
Length = 68
Score = 119 bits (60), Expect = 5e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 38 gaagcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaac 97
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 1 gaagcaaagttctgtgacactcagactctggttacgatagcagtcagtgcactacagaac 60
Query: 98 tttgtctc 105
||||||||
Sbjct: 61 tttgtctc 68
>27756_mml-mir-148a:mirbase
Length = 68
Score = 97.6 bits (49), Expect = 2e-21
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 41 gcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaacttt 100
||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct: 4 gcaaagttctgagacactccgactctgagtatgatagaagtcagtgcactacagaacttt 63
Query: 101 gtctc 105
|||||
Sbjct: 64 gtctc 68
>28471_hsa-mir-148a:mirbase
Length = 68
Score = 97.6 bits (49), Expect = 2e-21
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 41 gcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaacttt 100
||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct: 4 gcaaagttctgagacactccgactctgagtatgatagaagtcagtgcactacagaacttt 63
Query: 101 gtctc 105
|||||
Sbjct: 64 gtctc 68
>30855_ppy-mir-148a:mirbase
Length = 68
Score = 97.6 bits (49), Expect = 2e-21
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 41 gcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaacttt 100
||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct: 4 gcaaagttctgagacactccgactctgagtatgatagaagtcagtgcactacagaacttt 63
Query: 101 gtctc 105
|||||
Sbjct: 64 gtctc 68
>30242_ptr-mir-148a:mirbase
Length = 67
Score = 95.6 bits (48), Expect = 7e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 41 gcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaacttt 100
||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct: 4 gcaaagttctgagacactccgactctgagtatgatagaagtcagtgcactacagaacttt 63
Query: 101 gtct 104
||||
Sbjct: 64 gtct 67
>31882_mmu-mir-148a:mirbase
Length = 99
Score = 95.6 bits (48), Expect = 7e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 42 caaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaactttg 101
|||||||||| ||||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct: 22 caaagttctgagacactccgactctgagtatgatagaagtcagtgcactacagaactttg 81
Query: 102 tctc 105
||||
Sbjct: 82 tctc 85
>31506_oan-mir-148:mirbase
Length = 84
Score = 91.7 bits (46), Expect = 1e-19
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 41 gcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaacttt 100
||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||
Sbjct: 12 gcaaagttctgtgacactcagactctgattatgatagaagtcagtgcactacagaacttt 71
Query: 101 gtctcc 106
||||||
Sbjct: 72 gtctcc 77
>27050_eca-mir-148a:mirbase
Length = 68
Score = 89.7 bits (45), Expect = 4e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 41 gcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaacttt 100
||||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 4 gcaaagttctgagacactccgactctgaatatgatagaagtcagtgcactacagaacttt 63
Query: 101 gtctc 105
|||||
Sbjct: 64 gtctc 68
>33235_bta-mir-148a:mirbase
Length = 68
Score = 89.7 bits (45), Expect = 4e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 41 gcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaacttt 100
||||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 4 gcaaagttctgagacactccgactctgaatatgatagaagtcagtgcactacagaacttt 63
Query: 101 gtctc 105
|||||
Sbjct: 64 gtctc 68
>33998_ssc-mir-148a:mirbase
Length = 68
Score = 89.7 bits (45), Expect = 4e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 41 gcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaacttt 100
||||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 4 gcaaagttctgagacactccgactctgaatatgatagaagtcagtgcactacagaacttt 63
Query: 101 gtctc 105
|||||
Sbjct: 64 gtctc 68
>25797_xtr-mir-148a:mirbase
Length = 86
Score = 81.8 bits (41), Expect = 1e-16
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 42 caaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaactttg 101
||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||
Sbjct: 14 caaagttctgtgacacttagactctgaatatgatagcagtcagtgcactacagaactttg 73
Query: 102 t 102
|
Sbjct: 74 t 74
>27397_mdo-mir-148:mirbase
Length = 68
Score = 81.8 bits (41), Expect = 1e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 41 gcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaacttt 100
||||||||||| ||||||| ||||||| || ||||| ||||||||||||||||||||||
Sbjct: 4 gcaaagttctgggacactcagactctgattaggatagaagtcagtgcactacagaacttt 63
Query: 101 gtctc 105
|||||
Sbjct: 64 gtctc 68
>26723_cfa-mir-148a:mirbase
Length = 60
Score = 79.8 bits (40), Expect = 4e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 43 aaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaactttgt 102
||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 1 aaagttctgagacactccgactctgaatatgatagaagtcagtgcactacagaactttgt 60
>34321_dre-mir-148:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 gcagtcagtgcactacagaactttgt 102
|||||||||||| |||||||||||||
Sbjct: 45 gcagtcagtgcattacagaactttgt 70
>34606_fru-mir-148:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 gcagtcagtgcactacagaactttgt 102
|||||||||||| |||||||||||||
Sbjct: 45 gcagtcagtgcattacagaactttgt 70
>34753_tni-mir-148:mirbase
Length = 66
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 gcagtcagtgcactacagaactttgt 102
|||||||||||| |||||||||||||
Sbjct: 39 gcagtcagtgcattacagaactttgt 64
