miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27401_mdo-mir-153-1:mirbase
Length = 90
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
|||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 16 gtcatttttgtgatctgcagctagtattctggcttcagttgcatagtcacaaaagtgatc 75
Query: 63 gttggcag 70
|||||||
Sbjct: 76 attggcag 83
>31508_oan-mir-153:mirbase
Length = 145
Score = 97.6 bits (49), Expect = 1e-21
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagct-agtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 57 gtcatttttgtgatctgcagcttagtactctggctccagttgcatagtcacaaaagtgat 116
Query: 62 cgttggcag 70
| |||||||
Sbjct: 117 cattggcag 125
>34326_dre-mir-153c:mirbase
Length = 151
Score = 97.6 bits (49), Expect = 1e-21
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 43 gtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaatgatc 102
Query: 63 gttgg 67
||||
Sbjct: 103 attgg 107
>27057_eca-mir-153-2:mirbase
Length = 69
Score = 95.6 bits (48), Expect = 4e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
|||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 6 gtcatttttgtgatctgcagctagtattctcgctccagttgcatagtcacaaaagtgatc 65
>27763_mml-mir-153-1:mirbase
Length = 90
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
|||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 16 gtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtgatc 75
Query: 63 gttggcag 70
|||||||
Sbjct: 76 attggcag 83
>28218_mne-mir-153-1:mirbase
Length = 90
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
|||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 16 gtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtgatc 75
Query: 63 gttggcag 70
|||||||
Sbjct: 76 attggcag 83
>28479_hsa-mir-153-1:mirbase
Length = 90
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
|||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 16 gtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtgatc 75
Query: 63 gttggcag 70
|||||||
Sbjct: 76 attggcag 83
>30861_ppy-mir-153:mirbase
Length = 90
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
|||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 16 gtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtgatc 75
Query: 63 gttggcag 70
|||||||
Sbjct: 76 attggcag 83
>34609_fru-mir-153b:mirbase
Length = 86
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct: 12 gtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaatgagc 71
Query: 63 gttggcag 70
|||||||
Sbjct: 72 attggcag 79
>34756_tni-mir-153b:mirbase
Length = 86
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct: 12 gtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaatgagc 71
Query: 63 gttggcag 70
|||||||
Sbjct: 72 attggcag 79
>33240_bta-mir-153-1:mirbase
Length = 90
Score = 91.7 bits (46), Expect = 6e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 1 gcgtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtga 60
|||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 14 gcgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtga 73
Query: 61 tc 62
||
Sbjct: 74 tc 75
>34325_dre-mir-153b:mirbase
Length = 148
Score = 83.8 bits (42), Expect = 1e-17
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaa 56
|||||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 43 gtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaa 96
>25972_gga-mir-153:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
Query: 62 cgttgg 67
| ||||
Sbjct: 74 cattgg 79
>26480_tgu-mir-153-1:mirbase
Length = 72
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 2 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 61
Query: 62 cgttgg 67
| ||||
Sbjct: 62 cattgg 67
>26729_cfa-mir-153:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
Query: 62 cgttgg 67
| ||||
Sbjct: 74 cattgg 79
>27402_mdo-mir-153-2:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
Query: 62 cgttgg 67
| ||||
Sbjct: 74 cattgg 79
>27764_mml-mir-153-2:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
Query: 62 cgttgg 67
| ||||
Sbjct: 74 cattgg 79
>28219_mne-mir-153-2:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
Query: 62 cgttgg 67
| ||||
Sbjct: 74 cattgg 79
>28311_ggo-mir-153:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
Query: 62 cgttgg 67
| ||||
Sbjct: 74 cattgg 79
>28480_hsa-mir-153-2:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
Query: 62 cgttgg 67
| ||||
Sbjct: 74 cattgg 79
>30248_ptr-mir-153:mirbase
Length = 86
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
Query: 62 cgttgg 67
| ||||
Sbjct: 74 cattgg 79
>30862_ppy-mir-153-2:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
Query: 62 cgttgg 67
| ||||
Sbjct: 74 cattgg 79
>32760_rno-mir-153:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
Query: 62 cgttgg 67
| ||||
Sbjct: 74 cattgg 79
>33241_bta-mir-153-2:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
Query: 62 cgttgg 67
| ||||
Sbjct: 74 cattgg 79
>34004_ssc-mir-153:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
Query: 62 cgttgg 67
| ||||
Sbjct: 74 cattgg 79
>34608_fru-mir-153a:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 6 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 65
Query: 62 cgttgg 67
| ||||
Sbjct: 66 cattgg 71
>25800_xtr-mir-153-1:mirbase
Length = 87
Score = 73.8 bits (37), Expect = 1e-14
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctc-cagttgcatagtcacaaaagtgat 61
|||||||||||||||||||||| ||||| | | || ||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatttgcagcttgtaattttggtctcagttgcatagtcacaaaagtgat 73
Query: 62 c 62
|
Sbjct: 74 c 74
>27056_eca-mir-153:mirbase
Length = 67
Score = 73.8 bits (37), Expect = 1e-14
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 3 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 62
Query: 62 c 62
|
Sbjct: 63 c 63
>34324_dre-mir-153a:mirbase
Length = 81
Score = 67.9 bits (34), Expect = 9e-13
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| ||||||||||| || || |||||||||||||||||||||||||
Sbjct: 11 gtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaagtgat 70
Query: 62 cgttgg 67
| ||||
Sbjct: 71 cattgg 76
>31889_mmu-mir-153:mirbase
Length = 69
Score = 65.9 bits (33), Expect = 3e-12
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 5 gtcatttttgtgacgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 64
Query: 62 c 62
|
Sbjct: 65 c 65
>25801_xtr-mir-153-2:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 1e-11
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgacgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
>25503_pma-mir-153-3:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 37 ccagttgcatagtcacaaaagtgatc 62
||||||||||||||||||||||||||
Sbjct: 45 ccagttgcatagtcacaaaagtgatc 70
>34755_tni-mir-153a:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 5e-08
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 7 tttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgatcgtt 65
|||||||||| |||||||||||||| | | |||||||||||||||||||||||| ||
Sbjct: 11 tttttgtgatgttgcagctagtaatataagccaagttgcatagtcacaaaagtgatcatt 70
Query: 66 gg 67
||
Sbjct: 71 gg 72
>25501_pma-mir-153-1:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 agttgcatagtcacaaaagtgatcgttgg 67
|||||||||||||||||||||||| ||||
Sbjct: 45 agttgcatagtcacaaaagtgatcattgg 73
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagct 24
||||||||||||||||||||||
Sbjct: 9 gtcatttttgtgatttgcagct 30
>38755_cte-mir-153:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 ttgcatagtcacaaaagtgatcgt 64
||||||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgatcgt 84
>25502_pma-mir-153-2:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 agttgcatagtcacaaaagtgatc 62
||||||||||||||||||||||||
Sbjct: 45 agttgcatagtcacaaaagtgatc 68
>38870_lgi-mir-153:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ttgcatagtcacaaaagtgatcg 63
|||||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgatcg 83
>34826_spu-mir-153:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 agttgcatagtcacaaaagtgat 61
|||||||||||||||||||||||
Sbjct: 59 agttgcatagtcacaaaagtgat 81
>34882_sko-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 ttgcatagtcacaaaagtgat 61
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>34974_isc-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 ttgcatagtcacaaaagtgat 61
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>35014_dpu-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 ttgcatagtcacaaaagtgat 61
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>38118_bma-mir-153:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 ttgcatagtcacaaaagtgat 61
|||||||||||||||||||||
Sbjct: 50 ttgcatagtcacaaaagtgat 70
>24838_cin-mir-153:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 agttgcatagtcacaaaagtgatc 62
||||||||||| ||||||||||||
Sbjct: 64 agttgcatagtaacaaaagtgatc 87
