miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25980_gga-mir-187:mirbase
Length = 86
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 ctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagcc 75
Query: 61 agaggggcac 70
||||||||||
Sbjct: 76 agaggggcac 85
>27410_mdo-mir-187:mirbase
Length = 81
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 ggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 74
Query: 65 gggcac 70
||||||
Sbjct: 75 gggcac 80
>31517_oan-mir-187:mirbase
Length = 79
Score = 99.6 bits (50), Expect = 2e-22
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 1 ctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagcc 60
|||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 9 ctccggctacaacagaggacacaggagcttttcagaaccctcgtgtcttgtgttgcagcc 68
Query: 61 agaggggcac 70
||||| ||||
Sbjct: 69 agaggagcac 78
>25810_xtr-mir-187:mirbase
Length = 82
Score = 71.9 bits (36), Expect = 5e-14
Identities = 52/56 (92%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 8 tacaacacaggacatgggagcttttctg-aaccctcgtgtcttgtgttgcagccag 62
||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 16 tacaacacaggacatgggagcttacttggaaccctcgtgtcttgtgttgcagccag 71
>27778_mml-mir-187:mirbase
Length = 109
Score = 67.9 bits (34), Expect = 8e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
|||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||| |||
Sbjct: 35 ggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgtgttgcagccggag 94
Query: 65 gg 66
||
Sbjct: 95 gg 96
>28226_mne-mir-187:mirbase
Length = 109
Score = 67.9 bits (34), Expect = 8e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
|||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||| |||
Sbjct: 35 ggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgtgttgcagccggag 94
Query: 65 gg 66
||
Sbjct: 95 gg 96
>28319_ggo-mir-187:mirbase
Length = 109
Score = 67.9 bits (34), Expect = 8e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
|||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||| |||
Sbjct: 35 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccggag 94
Query: 65 gg 66
||
Sbjct: 95 gg 96
>28494_hsa-mir-187:mirbase
Length = 109
Score = 67.9 bits (34), Expect = 8e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
|||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||| |||
Sbjct: 35 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccggag 94
Query: 65 gg 66
||
Sbjct: 95 gg 96
>30108_ppa-mir-187:mirbase
Length = 109
Score = 67.9 bits (34), Expect = 8e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
|||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||| |||
Sbjct: 35 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccggag 94
Query: 65 gg 66
||
Sbjct: 95 gg 96
>32773_rno-mir-187:mirbase
Length = 104
Score = 67.9 bits (34), Expect = 8e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
|||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||| |||
Sbjct: 30 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccggag 89
Query: 65 gg 66
||
Sbjct: 90 gg 91
>31903_mmu-mir-187:mirbase
Length = 61
Score = 63.9 bits (32), Expect = 1e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagcc 60
|||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||
Sbjct: 4 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagcc 59
>30876_ppy-mir-187:mirbase
Length = 109
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
|||||||||| ||||| ||| ||| ||||| ||||||||||||||||||||||| |||
Sbjct: 35 ggctacaacataggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccggag 94
Query: 65 gg 66
||
Sbjct: 95 gg 96
>34017_ssc-mir-187:mirbase
Length = 78
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
||||||||||| |||| ||| ||| ||||| ||||||||||||||||||||||| |||
Sbjct: 11 ggctacaacacgggactcgggcgctgctctgacccctcgtgtcttgtgttgcagccggag 70
Query: 65 gg 66
||
Sbjct: 71 gg 72
>26742_cfa-mir-187:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
||||||||||| |||| ||| ||| || || ||||||||||||||||||||||| |||
Sbjct: 5 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccggag 64
Query: 65 gg 66
||
Sbjct: 65 gg 66
>33255_bta-mir-187:mirbase
Length = 109
Score = 52.0 bits (26), Expect = 5e-08
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
||||||||||| |||| ||| ||| || || ||||||||||||||||||||||| |||
Sbjct: 35 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccggag 94
Query: 65 gg 66
||
Sbjct: 95 gg 96
>27067_eca-mir-187:mirbase
Length = 61
Score = 48.1 bits (24), Expect = 8e-07
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagcc 60
||||||||||| |||| ||| ||| || || |||||||||||||||||||||||
Sbjct: 4 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 59
>34337_dre-mir-187:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctcgtgtcttgtgttgcagccag 62
|||||||||||||||||||||||
Sbjct: 60 ctcgtgtcttgtgttgcagccag 82
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 ggctacaacacaggacatgggagct 29
|||| ||||||||||||||||||||
Sbjct: 21 ggctgcaacacaggacatgggagct 45
>34617_fru-mir-187:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctcgtgtcttgtgttgcagccag 62
|||||||||||||||||||||||
Sbjct: 62 ctcgtgtcttgtgttgcagccag 84
>34764_tni-mir-187:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctcgtgtcttgtgttgcagccag 62
|||||||||||||||||||||||
Sbjct: 40 ctcgtgtcttgtgttgcagccag 62
