miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26492_tgu-mir-194-1:mirbase
Length = 72
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 tgctctcatatgtaacagcaactccatgtggactacactgacttccagtggagatgctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctctcatatgtaacagcaactccatgtggactacactgacttccagtggagatgctgt 60
Query: 61 tacttttgatgg 72
||||||||||||
Sbjct: 61 tacttttgatgg 72
>25984_gga-mir-194:mirbase
Length = 75
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 tgctctcatatgtaacagcaactccatgtggactacactgacttccagtggagatgctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tgctctcatatgtaacagcaactccatgtggactacactgacttccagtggagatgctgt 63
Query: 61 tacttttgat 70
||||||||||
Sbjct: 64 tacttttgat 73
>31523_oan-mir-194-1:mirbase
Length = 98
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 6 tcatatgtaacagcaactccatgtggactacactgacttccagtggagatgctgttactt 65
||||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 17 tcatatgtaacagcaactccatgtggattatgctgatttccagtggagaggctgttactt 76
Query: 66 ttgatgg 72
|||||||
Sbjct: 77 ttgatgg 83
>25814_xtr-mir-194-1:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 4e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggactacactgacttccagtggagatgctgttacttttgat 70
|||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggacttgtccgtattccagtggagatgctgttacttttgat 74
Query: 71 gg 72
||
Sbjct: 75 gg 76
>27078_eca-mir-194-2:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 3e-12
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 68
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgggtaccaatttccagtggagatgctgttacttttg 74
Query: 69 atgg 72
||||
Sbjct: 75 atgg 78
>27514_age-mir-194:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 3e-12
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 68
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
Query: 69 atgg 72
||||
Sbjct: 75 atgg 78
>27787_mml-mir-194-1:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 3e-12
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 68
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
Query: 69 atgg 72
||||
Sbjct: 75 atgg 78
>28228_mne-mir-194:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 3e-12
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 68
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
Query: 69 atgg 72
||||
Sbjct: 75 atgg 78
>28321_ggo-mir-194:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 3e-12
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 68
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
Query: 69 atgg 72
||||
Sbjct: 75 atgg 78
>28504_hsa-mir-194-1:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 3e-12
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 68
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
Query: 69 atgg 72
||||
Sbjct: 75 atgg 78
>30269_ptr-mir-194:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 3e-12
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 68
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
Query: 69 atgg 72
||||
Sbjct: 75 atgg 78
>25667_xla-mir-194:mirbase
Length = 79
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 43 ttccagtggagatgctgttacttttgatgg 72
||||||||||||||||||||||||||||||
Sbjct: 46 ttccagtggagatgctgttacttttgatgg 75
>33265_bta-mir-194-1:mirbase
Length = 97
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 43 ttccagtggagatgctgttacttttgatgg 72
||||||||||||||||||||||||||||||
Sbjct: 55 ttccagtggagatgctgttacttttgatgg 84
>30885_ppy-mir-194:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 8e-10
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 68
|||||||||||||||||||||||| || | |||||||||||||| |||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttacttttg 74
Query: 69 atgg 72
||||
Sbjct: 75 atgg 78
>32780_rno-mir-194-1:mirbase
Length = 83
Score = 58.0 bits (29), Expect = 8e-10
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggac--tacactgacttccagtggagatgctgttacttttg 68
||||||||||||||||||||||| | ||| || | ||||||||| ||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgcacaga-tcccagtggagctgctgttacttttg 73
Query: 69 atgg 72
||||
Sbjct: 74 atgg 77
>31912_mmu-mir-194-1:mirbase
Length = 67
Score = 50.1 bits (25), Expect = 2e-07
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggactacact-gacttccagtggagatgctgttacttttga 69
|||||||||||||||||||||||| || | ||||||||||| ||||||||||| |||
Sbjct: 7 tgtaacagcaactccatgtggactgtgctcggattccagtggagctgctgttacttctga 66
Query: 70 t 70
|
Sbjct: 67 t 67
>26750_cfa-mir-194:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 ttccagtggagatgctgttacttt 66
||||||||||||||||||||||||
Sbjct: 35 ttccagtggagatgctgttacttt 58
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 1 tgtaacagcaactccatgtgga 22
>34023_ssc-mir-194:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 ttccagtggagatgctgttacttttga 69
||||||||||||||||||||| |||||
Sbjct: 45 ttccagtggagatgctgttacctttga 71
>34024_ssc-mir-194:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 ttccagtggagatgctgttacttttga 69
||||||||||||||||||||| |||||
Sbjct: 45 ttccagtggagatgctgttacctttga 71
>34621_fru-mir-194:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atgtaacagcaactccatgtgga 32
|||||||||||||||||||||||
Sbjct: 7 atgtaacagcaactccatgtgga 29
>34768_tni-mir-194:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atgtaacagcaactccatgtgga 32
|||||||||||||||||||||||
Sbjct: 10 atgtaacagcaactccatgtgga 32
>25514_pma-mir-194:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 17 tgtaacagcaactccatgtgga 38
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 45 ccagtggagatgctgttacttttgatgg 72
||||||||| | ||||||||||||||||
Sbjct: 52 ccagtggagttactgttacttttgatgg 79
>25815_xtr-mir-194-2:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>27077_eca-mir-194:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>27788_mml-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>28505_hsa-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>31524_oan-mir-194-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 18 tgtaacagcaactccatgtgga 39
>31913_mmu-mir-194-2:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>32781_rno-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>33266_bta-mir-194-2:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>34345_dre-mir-194a:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
