miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25991_gga-mir-200a:mirbase
Length = 87
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 10 ggtcctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgt 69
|||||||||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct: 1 ggtcctctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgt 60
Query: 70 ctggtaacgatgtttaaagggtga 93
||||||||||||||||||||||||
Sbjct: 61 ctggtaacgatgtttaaagggtga 84
>27418_mdo-mir-200a:mirbase
Length = 86
Score = 103 bits (52), Expect = 2e-23
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 13 cctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctg 72
||||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 4 cctctgtgggcatcttactagacagtgctggattt-ttggatgtactctaacactgtctg 62
Query: 73 gtaacgatgtttaaag 88
||||||||||||||||
Sbjct: 63 gtaacgatgtttaaag 78
>31528_oan-mir-200a:mirbase
Length = 114
Score = 103 bits (52), Expect = 2e-23
Identities = 70/75 (93%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 9 tggtcctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactg 68
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 16 tggtcctccgtgggcatcttactagacagtgctggatttg--ggatctactctaacactg 73
Query: 69 tctggtaacgatgtt 83
|||||||||||||||
Sbjct: 74 tctggtaacgatgtt 88
>26759_cfa-mir-200a:mirbase
Length = 90
Score = 91.7 bits (46), Expect = 8e-20
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 8 ctggtcctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacact 67
|||| |||||||||||||||||| ||||||||||||||| || || |||||||||||
Sbjct: 1 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 60
Query: 68 gtctggtaacgatgtttaaagg 89
|||||||||||||||| |||||
Sbjct: 61 gtctggtaacgatgttcaaagg 82
>31923_mmu-mir-200a:mirbase
Length = 90
Score = 91.7 bits (46), Expect = 8e-20
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 8 ctggtcctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacact 67
|||| |||||||||||||||||| ||||||||||||||| || || |||||||||||
Sbjct: 1 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 60
Query: 68 gtctggtaacgatgtttaaagg 89
|||||||||||||||| |||||
Sbjct: 61 gtctggtaacgatgttcaaagg 82
>32788_rno-mir-200a:mirbase
Length = 89
Score = 91.7 bits (46), Expect = 8e-20
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 8 ctggtcctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacact 67
|||| |||||||||||||||||| ||||||||||||||| || || |||||||||||
Sbjct: 1 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 60
Query: 68 gtctggtaacgatgtttaaagg 89
|||||||||||||||| |||||
Sbjct: 61 gtctggtaacgatgttcaaagg 82
>33035_rno-mir-3548:mirbase
Length = 120
Score = 91.7 bits (46), Expect = 8e-20
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 8 ctggtcctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacact 67
|||| |||||||||||||||||| ||||||||||||||| || || |||||||||||
Sbjct: 102 ctgggcctctgtgggcatcttaccggacagtgctggatttcttggcttgactctaacact 43
Query: 68 gtctggtaacgatgtttaaagg 89
|||||||||||||||| |||||
Sbjct: 42 gtctggtaacgatgttcaaagg 21
>25820_xtr-mir-200a:mirbase
Length = 89
Score = 89.7 bits (45), Expect = 3e-19
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 9 tggtcctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactg 68
||||||||| ||| ||||||||||||||||||||||||| | ||| ||||||||||
Sbjct: 1 tggtcctctatggacatcttactagacagtgctggatttattttatcttttctaacactg 60
Query: 69 tctggtaacgatgtttaaagggtga 93
|||||||||||||||||||| ||||
Sbjct: 61 tctggtaacgatgtttaaagagtga 85
>27087_eca-mir-200a:mirbase
Length = 90
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 16 ctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctggta 75
||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 9 ctgtgggcatcttaccggacagtgctggatttctcggctcgactctaacactgtctggta 68
Query: 76 acgatgtttaaagg 89
|||||||| |||||
Sbjct: 69 acgatgttcaaagg 82
>33278_bta-mir-200a:mirbase
Length = 86
Score = 81.8 bits (41), Expect = 8e-17
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 13 cctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctg 72
||||||||| |||||||| ||||||||||||||| | ||| ||||||||||||||||
Sbjct: 4 cctctgtggacatcttaccggacagtgctggatttctcggctcgactctaacactgtctg 63
Query: 73 gtaacgatgtttaaagg 89
||||||||||| |||||
Sbjct: 64 gtaacgatgttcaaagg 80
>27798_mml-mir-200a:mirbase
Length = 90
Score = 67.9 bits (34), Expect = 1e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 16 ctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctggta 75
||||| ||||||||| ||||||||||||||| | || |||||||||||||||||||
Sbjct: 9 ctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgtctggta 68
Query: 76 acgatgtttaaagg 89
|||||||| |||||
Sbjct: 69 acgatgttcaaagg 82
>28518_hsa-mir-200a:mirbase
Length = 90
Score = 67.9 bits (34), Expect = 1e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 16 ctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctggta 75
||||| ||||||||| ||||||||||||||| | || |||||||||||||||||||
Sbjct: 9 ctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgtctggta 68
Query: 76 acgatgtttaaagg 89
|||||||| |||||
Sbjct: 69 acgatgttcaaagg 82
>30279_ptr-mir-200a:mirbase
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 16 ctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctggta 75
||||| ||||||||| ||||||||||||||| | || |||||||||||||||||||
Sbjct: 8 ctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgtctggta 67
Query: 76 acgatgtttaaagg 89
|||||||| |||||
Sbjct: 68 acgatgttcaaagg 81
>30897_ppy-mir-200a:mirbase
Length = 88
Score = 67.9 bits (34), Expect = 1e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 16 ctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctggta 75
||||| ||||||||| ||||||||||||||| | || |||||||||||||||||||
Sbjct: 9 ctgtgagcatcttaccggacagtgctggatttcccagcttgactctaacactgtctggta 68
Query: 76 acgatgtttaaagg 89
|||||||| |||||
Sbjct: 69 acgatgttcaaagg 82
>34355_dre-mir-200a:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 tctaacactgtctggtaacgatgttt 84
||||||||||||||||||||||||||
Sbjct: 50 tctaacactgtctggtaacgatgttt 75
>34628_fru-mir-200a:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 tctaacactgtctggtaacgatgttt 84
||||||||||||||||||||||||||
Sbjct: 48 tctaacactgtctggtaacgatgttt 73
>34775_tni-mir-200a:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 tctaacactgtctggtaacgatgtt 83
|||||||||||||||||||||||||
Sbjct: 38 tctaacactgtctggtaacgatgtt 62
>34310_dre-mir-141:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tctaacactgtctggtaacgatg 81
|||||||||||||||||||||||
Sbjct: 49 tctaacactgtctggtaacgatg 71
