miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25992_gga-mir-200b:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 1e-11
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 4 catcttactgggcagcattggatgatccatgccgctctaatactgcctggtaatgatgat 63
|||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct: 9 catcttactgggcagcattggatgttctctgtttttctaatactgcctggtaatgatgat 68
>27419_mdo-mir-200b:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 4 catcttactgggcagcattggatgatccatgccgctctaatactgcctggtaatgatgat 63
|||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct: 2 catcttactgggcagcattggatggtgtctgtgtttctaatactgcctggtaatgatgat 61
Query: 64 ga 65
||
Sbjct: 62 ga 63
>31529_oan-mir-200b:mirbase
Length = 109
Score = 58.0 bits (29), Expect = 9e-10
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 4 catcttactgggcagcattggatgatccatgccgctctaatactgcctggtaatgatgat 63
||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 24 catcttactgggcagcattggatgagttctgtgtttctaatactgcctggtaatgatgat 83
Query: 64 g 64
|
Sbjct: 84 g 84
>34629_fru-mir-200b:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatgatga 65
||||||||||||||||||||||||||||
Sbjct: 47 ctctaatactgcctggtaatgatgatga 74
>33279_bta-mir-200b:mirbase
Length = 59
Score = 54.0 bits (27), Expect = 1e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 4 catcttactgggcagcattggatgatccatgccgctctaatactgcctggtaatgatga 62
|||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct: 2 catcttactgggcagcattggatggtgtctggt-ctctaatactgcctggtaatgatga 59
>34356_dre-mir-200b:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctaatactgcctggtaatgatgatga 65
|||||||||||||||||||||||||||
Sbjct: 48 tctaatactgcctggtaatgatgatga 74
>34776_tni-mir-200b:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctaatactgcctggtaatgatgatga 65
|||||||||||||||||||||||||||
Sbjct: 37 tctaatactgcctggtaatgatgatga 63
>25821_xtr-mir-200b:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 tctaatactgcctggtaatgatgat 63
|||||||||||||||||||||||||
Sbjct: 51 tctaatactgcctggtaatgatgat 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 catcttactgggcagcattggat 26
|||||||||||||||||||||||
Sbjct: 16 catcttactgggcagcattggat 38
>26760_cfa-mir-200b:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatga 62
|||||||||||||||||||||||||
Sbjct: 42 ctctaatactgcctggtaatgatga 66
>27088_eca-mir-200b:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatga 62
|||||||||||||||||||||||||
Sbjct: 41 ctctaatactgcctggtaatgatga 65
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 catcttactgggcagcattggatg 27
||||||||||||||||||||||||
Sbjct: 9 catcttactgggcagcattggatg 32
>28519_hsa-mir-200b:mirbase
Length = 95
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatga 62
|||||||||||||||||||||||||
Sbjct: 54 ctctaatactgcctggtaatgatga 78
>31924_mmu-mir-200b:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatga 62
|||||||||||||||||||||||||
Sbjct: 42 ctctaatactgcctggtaatgatga 66
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 catcttactgggcagcattggat 26
|||||||||||||||||||||||
Sbjct: 9 catcttactgggcagcattggat 31
>32789_rno-mir-200b:mirbase
Length = 95
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatga 62
|||||||||||||||||||||||||
Sbjct: 54 ctctaatactgcctggtaatgatga 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 catcttactgggcagcattggat 26
|||||||||||||||||||||||
Sbjct: 21 catcttactgggcagcattggat 43
>34357_dre-mir-200c:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatg 61
||||||||||||||||||||||||
Sbjct: 48 ctctaatactgcctggtaatgatg 71
>25332_csa-mir-200:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 taatactgcctggtaatgatgat 63
|||||||||||||||||||||||
Sbjct: 44 taatactgcctggtaatgatgat 66
>25519_pma-mir-200b:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tctaatactgcctggtaatgatg 61
|||||||||||||||||||||||
Sbjct: 45 tctaatactgcctggtaatgatg 67
>24848_cin-mir-200:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 tctaatactgcctggtaatgatgat 63
|||||||||||||||||||| ||||
Sbjct: 48 tctaatactgcctggtaatggtgat 72
>24868_cin-mir-3575:mirbase
Length = 60
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 39 tctaatactgcctggtaatgatgat 63
|||||||||||||||||||| ||||
Sbjct: 25 tctaatactgcctggtaatggtgat 1
>24869_cin-mir-3575:mirbase
Length = 60
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 39 tctaatactgcctggtaatgatgat 63
|||||||||||||||||||| ||||
Sbjct: 25 tctaatactgcctggtaatggtgat 1
>24692_bfl-mir-200a:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 aatactgcctggtaatgatg 61
||||||||||||||||||||
Sbjct: 61 aatactgcctggtaatgatg 80
>26761_cfa-mir-200c:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatg 61
||||||||||||| ||||||||||
Sbjct: 38 ctctaatactgccgggtaatgatg 61
>27089_eca-mir-200c:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatg 61
||||||||||||| ||||||||||
Sbjct: 39 ctctaatactgccgggtaatgatg 62
>27420_mdo-mir-200c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatg 61
||||||||||||| ||||||||||
Sbjct: 41 ctctaatactgccgggtaatgatg 64
>27799_mml-mir-200c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatg 61
||||||||||||| ||||||||||
Sbjct: 41 ctctaatactgccgggtaatgatg 64
>28327_ggo-mir-200c:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatg 61
||||||||||||| ||||||||||
Sbjct: 40 ctctaatactgccgggtaatgatg 63
>28520_hsa-mir-200c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatg 61
||||||||||||| ||||||||||
Sbjct: 41 ctctaatactgccgggtaatgatg 64
>30898_ppy-mir-200c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatg 61
||||||||||||| ||||||||||
Sbjct: 41 ctctaatactgccgggtaatgatg 64
>31925_mmu-mir-200c:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatg 61
||||||||||||| ||||||||||
Sbjct: 42 ctctaatactgccgggtaatgatg 65
>32790_rno-mir-200c:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatg 61
||||||||||||| ||||||||||
Sbjct: 42 ctctaatactgccgggtaatgatg 65
>33069_rno-mir-3575:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 38 ctctaatactgcctggtaatgatg 61
||||||||||||| ||||||||||
Sbjct: 55 ctctaatactgccgggtaatgatg 32
>33280_bta-mir-200c:mirbase
Length = 65
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatg 61
||||||||||||| ||||||||||
Sbjct: 38 ctctaatactgccgggtaatgatg 61
>34401_dre-mir-429b:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tctaatactgcctggtaatg 58
||||||||||||||||||||
Sbjct: 65 tctaatactgcctggtaatg 84
>34889_sko-mir-200:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 ctctaatactgcctggtaatgatg 61
||||||||||| ||||||||||||
Sbjct: 58 ctctaatactgtctggtaatgatg 81
