miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26500_tgu-mir-202-1:mirbase
Length = 70
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
Query: 61 aatggggcaa 70
||||||||||
Sbjct: 61 aatggggcaa 70
>25993_gga-mir-202:mirbase
Length = 89
Score = 87.7 bits (44), Expect = 9e-19
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
||||||||||||||||||||||||||||| || |||||||||| |||| |||||||||
Sbjct: 12 ctttttcctatgcatatacttctttgagagtttgatctaaagaggcatagagcatgggaa 71
Query: 61 aatggggc 68
||||||||
Sbjct: 72 aatggggc 79
>28521_hsa-mir-202:mirbase
Length = 110
Score = 79.8 bits (40), Expect = 2e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 24 ctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatgggaa 83
Query: 61 aatggggc 68
|| |||||
Sbjct: 84 aacggggc 91
>30280_ptr-mir-202:mirbase
Length = 109
Score = 79.8 bits (40), Expect = 2e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 24 ctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatgggaa 83
Query: 61 aatggggc 68
|| |||||
Sbjct: 84 aacggggc 91
>32792_rno-mir-202:mirbase
Length = 72
Score = 73.8 bits (37), Expect = 1e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
|||||||||||||||||||||||||| | || ||||||||||||||| |||||||||
Sbjct: 5 ctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatgggaa 64
Query: 61 aatgg 65
|||||
Sbjct: 65 aatgg 69
>33281_bta-mir-202:mirbase
Length = 99
Score = 71.9 bits (36), Expect = 5e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
|||||||||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct: 15 ctttttcctatgcatatacttctttgagggtctggcctaaagaggtgtagggcatgggaa 74
Query: 61 aatggggc 68
||||||||
Sbjct: 75 aatggggc 82
>25822_xtr-mir-202-1:mirbase
Length = 87
Score = 65.9 bits (33), Expect = 3e-12
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
||||||||||||||||||| ||||||| || || | ||||| || ||||||||||||||
Sbjct: 11 ctttttcctatgcatatacctctttgaaaaatgaatgtaaaggggcatagggcatgggaa 70
Query: 61 aatgg 65
|||||
Sbjct: 71 aatgg 75
>31927_mmu-mir-202:mirbase
Length = 72
Score = 65.9 bits (33), Expect = 3e-12
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
|||||||||||||||||||||||||| | || ||||||||||||||| |||||||||
Sbjct: 5 ctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatgggaa 64
Query: 61 aatgg 65
||||
Sbjct: 65 gatgg 69
>31928_mmu-mir-202:mirbase
Length = 72
Score = 65.9 bits (33), Expect = 3e-12
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
|||||||||||||||||||||||||| | || ||||||||||||||| |||||||||
Sbjct: 5 ctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatgggaa 64
Query: 61 aatgg 65
||||
Sbjct: 65 gatgg 69
>34358_dre-mir-202:mirbase
Length = 76
Score = 65.9 bits (33), Expect = 3e-12
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaat-tgcttctaaagaggtatagggcatggga 59
||||||||||||||||||| ||||||| | ||||| |||||||| |||||||||||||
Sbjct: 7 ctttttcctatgcatatacctctttgacatgctgctt-taaagaggcatagggcatggga 65
Query: 60 aaatggggc 68
|||||||||
Sbjct: 66 aaatggggc 74
>25823_xtr-mir-202-2:mirbase
Length = 87
Score = 58.0 bits (29), Expect = 8e-10
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
||||||||||||||||||| ||||||| || | | ||||| || ||||||||||||||
Sbjct: 11 ctttttcctatgcatatacctctttgaaaaataaatgtaaaggggcatagggcatgggaa 70
Query: 61 aatgg 65
|||||
Sbjct: 71 aatgg 75
>26762_cfa-mir-202:mirbase
Length = 71
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgag 28
||||||||||||||||||||||||||||
Sbjct: 5 ctttttcctatgcatatacttctttgag 32
>34630_fru-mir-202:mirbase
Length = 69
Score = 54.0 bits (27), Expect = 1e-08
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
||||||||||||||||||| | ||| ||| | | |||||||| ||||||||||||||
Sbjct: 3 ctttttcctatgcatatacctttttcagatgtaactttaaagaggcatagggcatgggaa 62
Query: 61 aatgggg 67
|||||||
Sbjct: 63 aatgggg 69
>34777_tni-mir-202:mirbase
Length = 69
Score = 54.0 bits (27), Expect = 1e-08
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
||||||||||||||||||| | ||| ||| | | |||||||| ||||||||||||||
Sbjct: 3 ctttttcctatgcatatacctttttcagatgtaactttaaagaggcatagggcatgggaa 62
Query: 61 aatgggg 67
|||||||
Sbjct: 63 aatgggg 69
>34033_ssc-mir-202:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 ttcctatgcatatacttctttgag 28
||||||||||||||||||||||||
Sbjct: 13 ttcctatgcatatacttctttgag 36
