miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25994_gga-mir-203:mirbase
Length = 98
Score = 165 bits (83), Expect = 1e-41
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 46 ctcagcctccttggtgcagtggttcttaacagttcaacagttctctagcataattgtgaa 105
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 ctcagcctccttggtgcagtggttcttaacagttcaacagttctctatcataattgtgaa 60
Query: 106 atgtttaggaccacttgaccagcgagg 132
|||||||||||||||||||||||||||
Sbjct: 61 atgtttaggaccacttgaccagcgagg 87
>34359_dre-mir-203a:mirbase
Length = 96
Score = 109 bits (55), Expect = 5e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 57 tggtgcagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggac 116
||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct: 26 tggtgcagtggttcttaacagttcaacagttctatctcaaaattgtgaaatgtttaggac 85
Query: 117 cacttgaccag 127
|||||||||||
Sbjct: 86 cacttgaccag 96
>25824_xtr-mir-203:mirbase
Length = 74
Score = 97.6 bits (49), Expect = 2e-21
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 63 agtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccacttg 122
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 9 agtggttcttaacagttcaacagttctctatcgaaattgtgaaatgtttaggaccacttg 68
Query: 123 a 123
|
Sbjct: 69 a 69
>31929_mmu-mir-203:mirbase
Length = 76
Score = 97.6 bits (49), Expect = 2e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 57 tggtgcagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggac 116
|||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 4 tggtccagtggttcttgacagttcaacagttctgtagcacaattgtgaaatgtttaggac 63
Query: 117 cacttgacc 125
|||| ||||
Sbjct: 64 cactagacc 72
>32793_rno-mir-203:mirbase
Length = 97
Score = 97.6 bits (49), Expect = 2e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 57 tggtgcagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggac 116
|||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 8 tggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggac 67
Query: 117 cacttgacc 125
|||| ||||
Sbjct: 68 cactagacc 76
>33031_rno-mir-3545:mirbase
Length = 115
Score = 97.6 bits (49), Expect = 2e-21
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 57 tggtgcagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggac 116
|||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 94 tggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggac 35
Query: 117 cacttgacc 125
|||| ||||
Sbjct: 34 cactagacc 26
>33032_rno-mir-3545:mirbase
Length = 115
Score = 97.6 bits (49), Expect = 2e-21
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 57 tggtgcagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggac 116
|||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 94 tggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggac 35
Query: 117 cacttgacc 125
|||| ||||
Sbjct: 34 cactagacc 26
>27800_mml-mir-203:mirbase
Length = 110
Score = 95.6 bits (48), Expect = 8e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 62 cagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccactt 121
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 26 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccacta 85
Query: 122 gacc 125
||||
Sbjct: 86 gacc 89
>28522_hsa-mir-203:mirbase
Length = 110
Score = 95.6 bits (48), Expect = 8e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 62 cagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccactt 121
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 26 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccacta 85
Query: 122 gacc 125
||||
Sbjct: 86 gacc 89
>29377_hsa-mir-3545:mirbase
Length = 86
Score = 95.6 bits (48), Expect = 8e-21
Identities = 60/64 (93%)
Strand = Plus / Minus
Query: 62 cagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccactt 121
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 74 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccacta 15
Query: 122 gacc 125
||||
Sbjct: 14 gacc 11
>29378_hsa-mir-3545:mirbase
Length = 86
Score = 95.6 bits (48), Expect = 8e-21
Identities = 60/64 (93%)
Strand = Plus / Minus
Query: 62 cagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccactt 121
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 74 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccacta 15
Query: 122 gacc 125
||||
Sbjct: 14 gacc 11
>30899_ppy-mir-203:mirbase
Length = 110
Score = 95.6 bits (48), Expect = 8e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 62 cagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccactt 121
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 26 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccacta 85
Query: 122 gacc 125
||||
Sbjct: 86 gacc 89
>26763_cfa-mir-203:mirbase
Length = 94
Score = 93.7 bits (47), Expect = 3e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 62 cagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccact 120
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 17 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 75
>30281_ptr-mir-203:mirbase
Length = 109
Score = 93.7 bits (47), Expect = 3e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 62 cagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccact 120
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 25 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
>25521_pma-mir-203b:mirbase
Length = 90
Score = 83.8 bits (42), Expect = 3e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 59 gtgcagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggacca 118
||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 13 gtgcagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggacca 72
Query: 119 cttgac 124
||||||
Sbjct: 73 cttgac 78
>34631_fru-mir-203:mirbase
Length = 74
Score = 81.8 bits (41), Expect = 1e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 63 agtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccacttg 122
||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 8 agtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttaggaccacttg 67
Query: 123 accag 127
|||||
Sbjct: 68 accag 72
>34778_tni-mir-203:mirbase
Length = 74
Score = 81.8 bits (41), Expect = 1e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 63 agtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccacttg 122
||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 8 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 67
Query: 123 accag 127
|||||
Sbjct: 68 accag 72
>27421_mdo-mir-203:mirbase
Length = 81
Score = 71.9 bits (36), Expect = 1e-13
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 57 tggtgcagtggttcttaacagttcaacagttctctagcata-attgtgaaatgtttagga 115
|||| |||||||||||||||||||||||||||| | | | | ||||||||||||||||||
Sbjct: 9 tggtccagtggttcttaacagttcaacagttctgt-gtagagattgtgaaatgtttagga 67
Query: 116 ccacttga 123
||||||||
Sbjct: 68 ccacttga 75
>34360_dre-mir-203b:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 7e-12
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 63 agtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccacttg 122
||||||||| ||||||||||||||||| | | || ||||||||||||| |||||||||||
Sbjct: 14 agtggttctcaacagttcaacagttcttttg-atgattgtgaaatgttcaggaccacttg 72
Query: 123 a 123
|
Sbjct: 73 a 73
>25520_pma-mir-203a:mirbase
Length = 91
Score = 61.9 bits (31), Expect = 1e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 62 cagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccact 120
|||||||||| | ||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 16 cagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
