miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27624_sla-mir-204:mirbase
Length = 110
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 4 cgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaa 63
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 26 cgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaa 85
Query: 64 gggacgttc 72
|||||||||
Sbjct: 86 gggacgttc 94
>27801_mml-mir-204:mirbase
Length = 110
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 4 cgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaa 63
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 26 cgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaa 85
Query: 64 gggacgttc 72
|||||||||
Sbjct: 86 gggacgttc 94
>28232_mne-mir-204:mirbase
Length = 110
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 4 cgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaa 63
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 26 cgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaa 85
Query: 64 gggacgttc 72
|||||||||
Sbjct: 86 gggacgttc 94
>28328_ggo-mir-204:mirbase
Length = 110
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 4 cgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaa 63
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 26 cgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaa 85
Query: 64 gggacgttc 72
|||||||||
Sbjct: 86 gggacgttc 94
>28523_hsa-mir-204:mirbase
Length = 110
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 4 cgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaa 63
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 26 cgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaa 85
Query: 64 gggacgttc 72
|||||||||
Sbjct: 86 gggacgttc 94
>30116_ppa-mir-204:mirbase
Length = 110
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 4 cgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaa 63
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 26 cgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaa 85
Query: 64 gggacgttc 72
|||||||||
Sbjct: 86 gggacgttc 94
>30282_ptr-mir-204:mirbase
Length = 110
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 4 cgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaa 63
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 26 cgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaa 85
Query: 64 gggacgttc 72
|||||||||
Sbjct: 86 gggacgttc 94
>30900_ppy-mir-204:mirbase
Length = 110
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 4 cgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaa 63
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 26 cgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaa 85
Query: 64 gggacgttc 72
|||||||||
Sbjct: 86 gggacgttc 94
>32794_rno-mir-204:mirbase
Length = 110
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 4 cgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaa 63
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 26 cgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaa 85
Query: 64 gggacgttc 72
|||||||||
Sbjct: 86 gggacgttc 94
>33282_bta-mir-204:mirbase
Length = 96
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 4 cgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaa 63
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 16 cgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaa 75
Query: 64 gggacgttc 72
|||||||||
Sbjct: 76 gggacgttc 84
>34034_ssc-mir-204:mirbase
Length = 109
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 4 cgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaa 63
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 25 cgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaa 84
Query: 64 gggacgttc 72
|||||||||
Sbjct: 85 gggacgttc 93
>25826_xtr-mir-204-2:mirbase
Length = 88
Score = 119 bits (60), Expect = 3e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 5 gtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaag 64
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10 gtgggcttccctttgtcatcctatgcctgagaatatatgaagggggctgggaaggcaaag 69
Query: 65 ggacgttc 72
||||||||
Sbjct: 70 ggacgttc 77
>25995_gga-mir-204-1:mirbase
Length = 104
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 1 acccgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggc 60
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||
Sbjct: 23 acccgtggacttccctttgtcatcctatgcctgaaaatatatgaagggggcggggaaggc 82
Query: 61 aaagggacgttc 72
||||||||||||
Sbjct: 83 aaagggacgttc 94
>27090_eca-mir-204b-2:mirbase
Length = 68
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 6 tggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaagg 65
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 1 tggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaagg 60
Query: 66 gacgttc 72
|||||||
Sbjct: 61 gacgttc 67
>31930_mmu-mir-204:mirbase
Length = 68
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 6 tggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaagg 65
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 1 tggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaagg 60
Query: 66 gacgttc 72
|||||||
Sbjct: 61 gacgttc 67
>26764_cfa-mir-204:mirbase
Length = 60
Score = 103 bits (52), Expect = 2e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 11 ttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaagggacgt 70
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 ttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaagggacgt 60
>25825_xtr-mir-204-1:mirbase
Length = 105
Score = 60.0 bits (30), Expect = 2e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 acccgtggacttccctttgtcatcctatgcctgagaat 38
|||| ||| |||||||||||||||||||||||||||||
Sbjct: 21 acccatgggcttccctttgtcatcctatgcctgagaat 58
>34361_dre-mir-204-1:mirbase
Length = 93
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtggacttccctttgtcatcctatgcctg 33
|||||||||||||||||||||||||||||
Sbjct: 12 gtggacttccctttgtcatcctatgcctg 40
>26000_gga-mir-211:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 cttccctttgtcatcctatgcctgag 35
||||||||||||||||||||||||||
Sbjct: 9 cttccctttgtcatcctatgcctgag 34
>26505_tgu-mir-204-3:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 cttccctttgtcatcctatgcctgag 35
||||||||||||||||||||||||||
Sbjct: 10 cttccctttgtcatcctatgcctgag 35
>26506_tgu-mir-204-4:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 cttccctttgtcatcctatgcctgag 35
||||||||||||||||||||||||||
Sbjct: 10 cttccctttgtcatcctatgcctgag 35
>26507_tgu-mir-204-5:mirbase
Length = 60
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 cttccctttgtcatcctatgcctgag 35
||||||||||||||||||||||||||
Sbjct: 2 cttccctttgtcatcctatgcctgag 27
>25996_gga-mir-204-2:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtggacttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 21 gtgggcttccctttgtcatcctatgcctg 49
>26504_tgu-mir-204-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtggacttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 5 gtgggcttccctttgtcatcctatgcctg 33
>27422_mdo-mir-204:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtggacttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 19 gtgggcttccctttgtcatcctatgcctg 47
>34632_fru-mir-204:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtggacttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 9 gtgggcttccctttgtcatcctatgcctg 37
>34779_tni-mir-204a:mirbase
Length = 93
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtggacttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 9 gtgggcttccctttgtcatcctatgcctg 37
>31530_oan-mir-204:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cttccctttgtcatcctatgcctg 33
||||||||||||||||||||||||
Sbjct: 30 cttccctttgtcatcctatgcctg 53
>34780_tni-mir-204b:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tggacttccctttgtcatcctatgcctg 33
||||||||||||||| ||||||||||||
Sbjct: 11 tggacttccctttgttatcctatgcctg 38
>25522_pma-mir-204:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttccctttgtcatcctatgcctg 33
|||||||||||||||||||||||
Sbjct: 9 ttccctttgtcatcctatgcctg 31
>34362_dre-mir-204-2:mirbase
Length = 124
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttccctttgtcatcctatgcctg 33
|||||||||||||||||||||||
Sbjct: 37 ttccctttgtcatcctatgcctg 59
>30906_ppy-mir-211:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 gtggacttccctttgtcatcct 26
||||||||||||||||||||||
Sbjct: 20 gtggacttccctttgtcatcct 41
>26771_cfa-mir-211:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 gtggacttccctttgtcatcctatgcct 32
|||| ||||||||||||||||| |||||
Sbjct: 16 gtgggcttccctttgtcatcctttgcct 43
>27095_eca-mir-211:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 gtggacttccctttgtcatcctatgcct 32
|||| ||||||||||||||||| |||||
Sbjct: 9 gtgggcttccctttgtcatcctttgcct 36
>27807_mml-mir-211:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 gtggacttccctttgtcatcctatgcct 32
|||| ||||||||||||||||| |||||
Sbjct: 19 gtgggcttccctttgtcatcctttgcct 46
>31938_mmu-mir-211:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 gtggacttccctttgtcatcctatgcct 32
|||| ||||||||||||||||| |||||
Sbjct: 20 gtgggcttccctttgtcatcctttgcct 47
>32802_rno-mir-211:mirbase
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 10 cttccctttgtcatcctatgcct 32
||||||||||||||||| |||||
Sbjct: 25 cttccctttgtcatcctttgcct 47
>33288_bta-mir-211:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 5 gtggacttccctttgtcatcctatgcc 31
|||| ||||||||||||||||| ||||
Sbjct: 20 gtgggcttccctttgtcatcctttgcc 46
