miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25996_gga-mir-204-2:mirbase
Length = 101
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 acctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 acctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaa 76
Query: 61 agggatgctcag 72
||||||||||||
Sbjct: 77 agggatgctcag 88
>27422_mdo-mir-204:mirbase
Length = 97
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 1 acctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaa 60
||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||
Sbjct: 15 acctgtgggcttccctttgtcatcctatgcctggaaatcagagtggggcagggacagcaa 74
Query: 61 agggatgctcag 72
||||||||||||
Sbjct: 75 agggatgctcag 86
>34632_fru-mir-204:mirbase
Length = 92
Score = 95.6 bits (48), Expect = 4e-21
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 acctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaa 60
|||||||||||||||||||||||||||||||||||| || | | |||||||||||||||
Sbjct: 5 acctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggacagcaa 63
Query: 61 agggatgctcag 72
||||||||||||
Sbjct: 64 agggatgctcag 75
>34779_tni-mir-204a:mirbase
Length = 93
Score = 95.6 bits (48), Expect = 4e-21
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 acctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaa 60
|||||||||||||||||||||||||||||||||||| || | | |||||||||||||||
Sbjct: 5 acctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggacagcaa 63
Query: 61 agggatgctcag 72
||||||||||||
Sbjct: 64 agggatgctcag 75
>31530_oan-mir-204:mirbase
Length = 119
Score = 77.8 bits (39), Expect = 9e-16
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 9 gcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaaagggatg 67
||||||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct: 29 gcttccctttgtcatcctatgcctggaagtcaaaatggggcagggacagcaaagggatg 87
>33288_bta-mir-211:mirbase
Length = 110
Score = 71.9 bits (36), Expect = 6e-14
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 1 acctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaa 60
|||||||||||||||||||||||||| |||| | | || |||| ||||||||||||||
Sbjct: 16 acctgtgggcttccctttgtcatcctttgcccagggttctgagtggggcagggacagcaa 75
Query: 61 agggatgctcag 72
|||| |||||||
Sbjct: 76 aggggtgctcag 87
>25825_xtr-mir-204-1:mirbase
Length = 105
Score = 69.9 bits (35), Expect = 2e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 6 tgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaaaggga 65
|||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct: 26 tgggcttccctttgtcatcctatgcctgagaatgctggagaggcagggacagcaaaggga 85
Query: 66 tgctcag 72
|||||||
Sbjct: 86 tgctcag 92
>25826_xtr-mir-204-2:mirbase
Length = 88
Score = 65.9 bits (33), Expect = 3e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 acctgtgggcttccctttgtcatcctatgcctg 33
|||||||||||||||||||||||||||||||||
Sbjct: 6 acctgtgggcttccctttgtcatcctatgcctg 38
>26771_cfa-mir-211:mirbase
Length = 100
Score = 65.9 bits (33), Expect = 3e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 4 tgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaaagg 63
||||||||||||||||||||||| ||||| | | || || | |||||||||||||||||
Sbjct: 15 tgtgggcttccctttgtcatcctttgcctagggttctgagaggggcagggacagcaaagg 74
Query: 64 gatgctcag 72
| |||||||
Sbjct: 75 ggtgctcag 83
>27095_eca-mir-211:mirbase
Length = 87
Score = 65.9 bits (33), Expect = 3e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 4 tgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaaagg 63
||||||||||||||||||||||| ||||| | | || |||| ||||||||| |||||||
Sbjct: 8 tgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggactgcaaagg 67
Query: 64 gatgctcag 72
| |||||||
Sbjct: 68 ggtgctcag 76
>31938_mmu-mir-211:mirbase
Length = 106
Score = 63.9 bits (32), Expect = 1e-11
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 1 acctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaa 60
|||||||||||||||||||||||||| ||||| | || ||||||||| |||||||||
Sbjct: 16 acctgtgggcttccctttgtcatcctttgcctaggcctctgagtgaggcaaggacagcaa 75
Query: 61 aggg 64
||||
Sbjct: 76 aggg 79
>34361_dre-mir-204-1:mirbase
Length = 93
Score = 63.9 bits (32), Expect = 1e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 acctgtgggcttccctttgtcatcctatgcctggag 36
|||||||| |||||||||||||||||||||||||||
Sbjct: 8 acctgtggacttccctttgtcatcctatgcctggag 43
>27807_mml-mir-211:mirbase
Length = 109
Score = 58.0 bits (29), Expect = 8e-10
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 4 tgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaaagg 63
||||||||||||||||||||||| ||||| | | || || |||||||||||||||||
Sbjct: 18 tgtgggcttccctttgtcatcctttgcctagggctctgagcagggcagggacagcaaagg 77
Query: 64 gatgctcag 72
| |||||||
Sbjct: 78 ggtgctcag 86
>26000_gga-mir-211:mirbase
Length = 74
Score = 56.0 bits (28), Expect = 3e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 cctgtgggcttccctttgtcatcctatgcctg 33
|||||| |||||||||||||||||||||||||
Sbjct: 1 cctgtgagcttccctttgtcatcctatgcctg 32
>26505_tgu-mir-204-3:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 3e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 cctgtgggcttccctttgtcatcctatgcctg 33
|||||| |||||||||||||||||||||||||
Sbjct: 2 cctgtgagcttccctttgtcatcctatgcctg 33
>26506_tgu-mir-204-4:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 3e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 cctgtgggcttccctttgtcatcctatgcctg 33
|||||| |||||||||||||||||||||||||
Sbjct: 2 cctgtgagcttccctttgtcatcctatgcctg 33
>34362_dre-mir-204-2:mirbase
Length = 124
Score = 56.0 bits (28), Expect = 3e-09
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 6 tgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaaaggga 65
|||| ||||||||||||||||||||||| || || |||||| |||||||||||||||
Sbjct: 32 tgggtttccctttgtcatcctatgcctgcagttcctgatgaggctgggacagcaaaggga 91
>25995_gga-mir-204-1:mirbase
Length = 104
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgggcttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>26503_tgu-mir-204-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgggcttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 5 gtggacttccctttgtcatcctatgcctg 33
>26507_tgu-mir-204-5:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcttccctttgtcatcctatgcctg 33
|||||||||||||||||||||||||
Sbjct: 1 gcttccctttgtcatcctatgcctg 25
>27624_sla-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgggcttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>27801_mml-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgggcttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>28232_mne-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgggcttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>28235_mne-mir-211:mirbase
Length = 109
Score = 50.1 bits (25), Expect = 2e-07
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 4 tgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaaagg 63
||||||||||||||||||||||| |||| | | || || |||||||||||||||||
Sbjct: 18 tgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggacagcaaagg 77
Query: 64 gatgctcag 72
| |||||||
Sbjct: 78 ggtgctcag 86
>28328_ggo-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgggcttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>28523_hsa-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgggcttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>28529_hsa-mir-211:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 2e-07
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 4 tgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaaagg 63
||||||||||||||||||||||| |||| | | || || |||||||||||||||||
Sbjct: 19 tgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggacagcaaagg 78
Query: 64 gatgctcag 72
| |||||||
Sbjct: 79 ggtgctcag 87
>30116_ppa-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgggcttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>30282_ptr-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgggcttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>30288_ptr-mir-211:mirbase
Length = 109
Score = 50.1 bits (25), Expect = 2e-07
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 4 tgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaaagg 63
||||||||||||||||||||||| |||| | | || || |||||||||||||||||
Sbjct: 19 tgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggacagcaaagg 78
Query: 64 gatgctcag 72
| |||||||
Sbjct: 79 ggtgctcag 87
>30900_ppy-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgggcttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>32794_rno-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgggcttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>33282_bta-mir-204:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgggcttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 17 gtggacttccctttgtcatcctatgcctg 45
>34034_ssc-mir-204:mirbase
Length = 109
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtgggcttccctttgtcatcctatgcctg 33
|||| ||||||||||||||||||||||||
Sbjct: 26 gtggacttccctttgtcatcctatgcctg 54
>27090_eca-mir-204b-2:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cttccctttgtcatcctatgcctg 33
||||||||||||||||||||||||
Sbjct: 5 cttccctttgtcatcctatgcctg 28
>31930_mmu-mir-204:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cttccctttgtcatcctatgcctg 33
||||||||||||||||||||||||
Sbjct: 5 cttccctttgtcatcctatgcctg 28
>32802_rno-mir-211:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 8e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 acctgtgggcttccctttgtcatcctatgcct 32
|||| ||||||||||||||||||||| |||||
Sbjct: 16 acctctgggcttccctttgtcatcctttgcct 47
>25522_pma-mir-204:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttccctttgtcatcctatgcctg 33
|||||||||||||||||||||||
Sbjct: 9 ttccctttgtcatcctatgcctg 31
>26764_cfa-mir-204:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttccctttgtcatcctatgcctg 33
|||||||||||||||||||||||
Sbjct: 1 ttccctttgtcatcctatgcctg 23
>34780_tni-mir-204b:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 3e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 acctgtgggcttccctttgtcatcctatgcctgga 35
|||| ||| ||||||||||| ||||||||||||||
Sbjct: 6 acctatggacttccctttgttatcctatgcctgga 40
>30906_ppy-mir-211:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 ggcagggacagcaaagggatgctcag 72
|||||||||||||||||| |||||||
Sbjct: 62 ggcagggacagcaaaggggtgctcag 87
