miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26505_tgu-mir-204-3:mirbase
Length = 92
Score = 119 bits (60), Expect = 2e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcctgagcgatgcctggaggctgggacggccaagggaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gcttccctttgtcatcctatgcctgagcgatgcctggaggctgggacggccaagggaggc 68
>26506_tgu-mir-204-4:mirbase
Length = 92
Score = 119 bits (60), Expect = 2e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcctgagcgatgcctggaggctgggacggccaagggaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gcttccctttgtcatcctatgcctgagcgatgcctggaggctgggacggccaagggaggc 68
>26000_gga-mir-211:mirbase
Length = 74
Score = 103 bits (52), Expect = 1e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcctgagcgatgcctggaggctgggacggccaagggaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8 gcttccctttgtcatcctatgcctgagcgatgcctggaggctgggacggtgaagggaggc 67
>25825_xtr-mir-204-1:mirbase
Length = 105
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcctgag 27
|||||||||||||||||||||||||||
Sbjct: 29 gcttccctttgtcatcctatgcctgag 55
>25826_xtr-mir-204-2:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcctgag 27
|||||||||||||||||||||||||||
Sbjct: 14 gcttccctttgtcatcctatgcctgag 40
>26503_tgu-mir-204-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 10 cttccctttgtcatcctatgcctgag 35
>27090_eca-mir-204b-2:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 5 cttccctttgtcatcctatgcctgag 30
>27624_sla-mir-204:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 32 cttccctttgtcatcctatgcctgag 57
>27801_mml-mir-204:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 32 cttccctttgtcatcctatgcctgag 57
>28232_mne-mir-204:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 32 cttccctttgtcatcctatgcctgag 57
>28328_ggo-mir-204:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 32 cttccctttgtcatcctatgcctgag 57
>28523_hsa-mir-204:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 32 cttccctttgtcatcctatgcctgag 57
>30116_ppa-mir-204:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 32 cttccctttgtcatcctatgcctgag 57
>30282_ptr-mir-204:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 32 cttccctttgtcatcctatgcctgag 57
>30900_ppy-mir-204:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 32 cttccctttgtcatcctatgcctgag 57
>31930_mmu-mir-204:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 5 cttccctttgtcatcctatgcctgag 30
>32794_rno-mir-204:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 32 cttccctttgtcatcctatgcctgag 57
>33282_bta-mir-204:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 22 cttccctttgtcatcctatgcctgag 47
>34034_ssc-mir-204:mirbase
Length = 109
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctgag 27
||||||||||||||||||||||||||
Sbjct: 31 cttccctttgtcatcctatgcctgag 56
>25995_gga-mir-204-1:mirbase
Length = 104
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctga 26
|||||||||||||||||||||||||
Sbjct: 32 cttccctttgtcatcctatgcctga 56
>25996_gga-mir-204-2:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcctg 25
|||||||||||||||||||||||||
Sbjct: 25 gcttccctttgtcatcctatgcctg 49
>26504_tgu-mir-204-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcctg 25
|||||||||||||||||||||||||
Sbjct: 9 gcttccctttgtcatcctatgcctg 33
>26764_cfa-mir-204:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 ttccctttgtcatcctatgcctgag 27
|||||||||||||||||||||||||
Sbjct: 1 ttccctttgtcatcctatgcctgag 25
>27422_mdo-mir-204:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcctg 25
|||||||||||||||||||||||||
Sbjct: 23 gcttccctttgtcatcctatgcctg 47
>31530_oan-mir-204:mirbase
Length = 119
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcctg 25
|||||||||||||||||||||||||
Sbjct: 29 gcttccctttgtcatcctatgcctg 53
>34632_fru-mir-204:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcctg 25
|||||||||||||||||||||||||
Sbjct: 13 gcttccctttgtcatcctatgcctg 37
>34779_tni-mir-204a:mirbase
Length = 93
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcctg 25
|||||||||||||||||||||||||
Sbjct: 13 gcttccctttgtcatcctatgcctg 37
>34361_dre-mir-204-1:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 6e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctg 25
||||||||||||||||||||||||
Sbjct: 17 cttccctttgtcatcctatgcctg 40
>25522_pma-mir-204:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ttccctttgtcatcctatgcctg 25
|||||||||||||||||||||||
Sbjct: 9 ttccctttgtcatcctatgcctg 31
>34362_dre-mir-204-2:mirbase
Length = 124
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ttccctttgtcatcctatgcctg 25
|||||||||||||||||||||||
Sbjct: 37 ttccctttgtcatcctatgcctg 59
>26771_cfa-mir-211:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcct 24
|||||||||||||||||| |||||
Sbjct: 20 gcttccctttgtcatcctttgcct 43
>27095_eca-mir-211:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcct 24
|||||||||||||||||| |||||
Sbjct: 13 gcttccctttgtcatcctttgcct 36
>27807_mml-mir-211:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcct 24
|||||||||||||||||| |||||
Sbjct: 23 gcttccctttgtcatcctttgcct 46
>31938_mmu-mir-211:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcct 24
|||||||||||||||||| |||||
Sbjct: 24 gcttccctttgtcatcctttgcct 47
>32802_rno-mir-211:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcct 24
|||||||||||||||||| |||||
Sbjct: 24 gcttccctttgtcatcctttgcct 47
>34780_tni-mir-204b:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 2 cttccctttgtcatcctatgcctg 25
||||||||||| ||||||||||||
Sbjct: 15 cttccctttgttatcctatgcctg 38
>33288_bta-mir-211:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 gcttccctttgtcatcctatgcc 23
|||||||||||||||||| ||||
Sbjct: 24 gcttccctttgtcatcctttgcc 46
