miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27428_mdo-mir-214:mirbase
Length = 110
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgt 70
Query: 61 acagcaggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||||||| ||||||||
Sbjct: 71 acagcaggcacagacaggcagtcacatgacaa 102
>25833_xtr-mir-214:mirbase
Length = 107
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 4 ggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtaca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtaca 70
Query: 64 gcaggcacagacaggcagtcgcatgacaa 92
|||||||||||||||||||| ||||||||
Sbjct: 71 gcaggcacagacaggcagtcacatgacaa 99
>26773_cfa-mir-214:mirbase
Length = 110
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 1 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 11 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgt 70
Query: 61 acagcaggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||||||| ||||||||
Sbjct: 71 acagcaggcacagacaggcagtcacatgacaa 102
>31534_oan-mir-214:mirbase
Length = 118
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 1 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgt 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gacggagttgtcacgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgt 72
Query: 61 acagcaggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||||||| ||||||||
Sbjct: 73 acagcaggcacagacaggcagtcacatgacaa 104
>33290_bta-mir-214:mirbase
Length = 110
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 1 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 11 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgt 70
Query: 61 acagcaggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||||||| ||||||||
Sbjct: 71 acagcaggcacagacaggcagtcacatgacaa 102
>34039_ssc-mir-214:mirbase
Length = 110
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 1 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 11 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgt 70
Query: 61 acagcaggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||||||| ||||||||
Sbjct: 71 acagcaggcacagacaggcagtcacatgacaa 102
>27519_age-mir-214:mirbase
Length = 110
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 5 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 15 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 74
Query: 65 caggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||| ||||||||
Sbjct: 75 caggcacagacaggcagtcacatgacaa 102
>27625_sla-mir-214:mirbase
Length = 110
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 5 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 15 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 74
Query: 65 caggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||| ||||||||
Sbjct: 75 caggcacagacaggcagtcacatgacaa 102
>27809_mml-mir-214:mirbase
Length = 110
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 5 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 15 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 74
Query: 65 caggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||| ||||||||
Sbjct: 75 caggcacagacaggcagtcacatgacaa 102
>28236_mne-mir-214:mirbase
Length = 110
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 5 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 15 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 74
Query: 65 caggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||| ||||||||
Sbjct: 75 caggcacagacaggcagtcacatgacaa 102
>28330_ggo-mir-214:mirbase
Length = 110
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 5 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 15 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 74
Query: 65 caggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||| ||||||||
Sbjct: 75 caggcacagacaggcagtcacatgacaa 102
>28531_hsa-mir-214:mirbase
Length = 110
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 5 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 15 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 74
Query: 65 caggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||| ||||||||
Sbjct: 75 caggcacagacaggcagtcacatgacaa 102
>30118_ppa-mir-214:mirbase
Length = 110
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 5 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 15 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 74
Query: 65 caggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||| ||||||||
Sbjct: 75 caggcacagacaggcagtcacatgacaa 102
>30289_ptr-mir-214:mirbase
Length = 110
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 5 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 15 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 74
Query: 65 caggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||| ||||||||
Sbjct: 75 caggcacagacaggcagtcacatgacaa 102
>30907_ppy-mir-214:mirbase
Length = 110
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 5 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 15 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 74
Query: 65 caggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||| ||||||||
Sbjct: 75 caggcacagacaggcagtcacatgacaa 102
>31941_mmu-mir-214:mirbase
Length = 110
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 5 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 15 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 74
Query: 65 caggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||| ||||||||
Sbjct: 75 caggcacagacaggcagtcacatgacaa 102
>32804_rno-mir-214:mirbase
Length = 110
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 5 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 15 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 74
Query: 65 caggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||| ||||||||
Sbjct: 75 caggcacagacaggcagtcacatgacaa 102
>33026_rno-mir-3120:mirbase
Length = 117
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Minus
Query: 5 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 107 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 48
Query: 65 caggcacagacaggcagtcgcatgacaa 92
||||||||||||||||||| ||||||||
Sbjct: 47 caggcacagacaggcagtcacatgacaa 20
>29245_hsa-mir-3120:mirbase
Length = 81
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Minus
Query: 10 gtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggc 69
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 81 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 22
Query: 70 acagacaggcagtcgcatgac 90
|||||||||||||| ||||||
Sbjct: 21 acagacaggcagtcacatgac 1
>29246_hsa-mir-3120:mirbase
Length = 81
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Minus
Query: 10 gtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggc 69
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 81 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 22
Query: 70 acagacaggcagtcgcatgac 90
|||||||||||||| ||||||
Sbjct: 21 acagacaggcagtcacatgac 1
>27097_eca-mir-214:mirbase
Length = 65
Score = 121 bits (61), Expect = 9e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 18 tctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacagacag 77
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
Query: 78 gcagt 82
|||||
Sbjct: 61 gcagt 65
>26001_gga-mir-214:mirbase
Length = 110
Score = 115 bits (58), Expect = 6e-27
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 3 cggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtac 62
||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||||
Sbjct: 13 cggagttgtcatgtgtctgtctgtctacacttgctgtccataacatccactcacctgtac 72
Query: 63 agcaggcacagacaggcagtcgcatgacaa 92
||| || |||||||||||||| | ||||||
Sbjct: 73 agcgggaacagacaggcagtcacctgacaa 102
>34368_dre-mir-214:mirbase
Length = 100
Score = 99.6 bits (50), Expect = 3e-22
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 16 tgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacagac 75
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 18 tgtctgcctgtctacacttgctgtgcagaacttcct-gcacctgtacagcaggcacagac 76
Query: 76 aggcag 81
||||||
Sbjct: 77 aggcag 82
>34636_fru-mir-214:mirbase
Length = 99
Score = 81.8 bits (41), Expect = 8e-17
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 14 tgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacag 73
||||||||||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
Query: 74 acaggcag 81
||||||||
Sbjct: 78 acaggcag 85
>34784_tni-mir-214:mirbase
Length = 88
Score = 81.8 bits (41), Expect = 8e-17
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 14 tgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacag 73
||||||||||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 5 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 62
Query: 74 acaggcag 81
||||||||
Sbjct: 63 acaggcag 70
