miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26003_gga-mir-216:mirbase
Length = 106
Score = 89.7 bits (45), Expect = 2e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 5 ttggcttaatctcagctggcaactgtgagcagttaataactctctcacagttgtagctgg 64
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct: 13 ttggcttaatctcagctggcaactgtgagcagttaataa--ttctcacagtggtatctgg 70
Query: 65 gattatgc 72
||||||||
Sbjct: 71 gattatgc 78
>25835_xtr-mir-216:mirbase
Length = 91
Score = 77.8 bits (39), Expect = 9e-16
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 5 ttggcttaatctcagctggcaactgtgagcagttaataa 43
|||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ttggcttaatctcagctggcaactgtgagcagttaataa 49
>26775_cfa-mir-216a:mirbase
Length = 105
Score = 65.9 bits (33), Expect = 3e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tgagttggcttaatctcagctggcaactgtgag 33
|||||||||||||||||||||||||||||||||
Sbjct: 9 tgagttggcttaatctcagctggcaactgtgag 41
>27430_mdo-mir-216:mirbase
Length = 97
Score = 65.9 bits (33), Expect = 3e-12
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 ttggcttaatctcagctggcaactgtgagcagttaat-aactctctcacagttgtagctg 63
||||||||||||||||||||||||||||| |||||| || || |||||||| || |||
Sbjct: 13 ttggcttaatctcagctggcaactgtgagatgttaataaattccctcacagtggtctctg 72
Query: 64 ggattatgc 72
|||||||||
Sbjct: 73 ggattatgc 81
>27811_mml-mir-216a:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 3e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tgagttggcttaatctcagctggcaactgtgag 33
|||||||||||||||||||||||||||||||||
Sbjct: 9 tgagttggcttaatctcagctggcaactgtgag 41
>28332_ggo-mir-216:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 3e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tgagttggcttaatctcagctggcaactgtgag 33
|||||||||||||||||||||||||||||||||
Sbjct: 9 tgagttggcttaatctcagctggcaactgtgag 41
>28533_hsa-mir-216a:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 3e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tgagttggcttaatctcagctggcaactgtgag 33
|||||||||||||||||||||||||||||||||
Sbjct: 9 tgagttggcttaatctcagctggcaactgtgag 41
>30119_ppa-mir-216:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 3e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tgagttggcttaatctcagctggcaactgtgag 33
|||||||||||||||||||||||||||||||||
Sbjct: 9 tgagttggcttaatctcagctggcaactgtgag 41
>30909_ppy-mir-216:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 3e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tgagttggcttaatctcagctggcaactgtgag 33
|||||||||||||||||||||||||||||||||
Sbjct: 9 tgagttggcttaatctcagctggcaactgtgag 41
>31408_lca-mir-216:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 3e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tgagttggcttaatctcagctggcaactgtgag 33
|||||||||||||||||||||||||||||||||
Sbjct: 9 tgagttggcttaatctcagctggcaactgtgag 41
>33292_bta-mir-216a:mirbase
Length = 109
Score = 65.9 bits (33), Expect = 3e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tgagttggcttaatctcagctggcaactgtgag 33
|||||||||||||||||||||||||||||||||
Sbjct: 9 tgagttggcttaatctcagctggcaactgtgag 41
>34041_ssc-mir-216:mirbase
Length = 105
Score = 65.9 bits (33), Expect = 3e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tgagttggcttaatctcagctggcaactgtgag 33
|||||||||||||||||||||||||||||||||
Sbjct: 9 tgagttggcttaatctcagctggcaactgtgag 41
>31536_oan-mir-216:mirbase
Length = 123
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 ggcttaatctcagctggcaactgtgag 33
|||||||||||||||||||||||||||
Sbjct: 26 ggcttaatctcagctggcaactgtgag 52
>30291_ptr-mir-216a:mirbase
Length = 109
Score = 50.1 bits (25), Expect = 2e-07
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 1 tgagttggcttaatctcagctggcaactgtgag 33
|||||||||||| ||||||||||||||||||||
Sbjct: 9 tgagttggctta-tctcagctggcaactgtgag 40
>31943_mmu-mir-216a:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 ttggcttaatctcagctggcaactgtgag 33
|||| ||||||||||||||||||||||||
Sbjct: 1 ttggtttaatctcagctggcaactgtgag 29
>32806_rno-mir-216a:mirbase
Length = 106
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 tgagttggcttaatctcagctggcaactgtgag 33
|||||| | ||||||||||||||||||||||||
Sbjct: 9 tgagttagtttaatctcagctggcaactgtgag 41
>34369_dre-mir-216a-1:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 ttggcttaatctcagctggcaactgtgag 33
||||| |||||||||||||||||||||||
Sbjct: 9 ttggcataatctcagctggcaactgtgag 37
>34370_dre-mir-216a-2:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 ttggcttaatctcagctggcaactgtgag 33
||||| |||||||||||||||||||||||
Sbjct: 9 ttggcataatctcagctggcaactgtgag 37
>24696_bfl-mir-216:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 taatctcagctggcaactgtgag 33
|||||||||||||||||||||||
Sbjct: 9 taatctcagctggcaactgtgag 31
>27099_eca-mir-216a:mirbase
Length = 58
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 taatctcagctggcaactgtgag 33
|||||||||||||||||||||||
Sbjct: 1 taatctcagctggcaactgtgag 23
>25528_pma-mir-216a:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aatctcagctggcaactgtgag 33
||||||||||||||||||||||
Sbjct: 13 aatctcagctggcaactgtgag 34
>34637_fru-mir-216a:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aatctcagctggcaactgtgag 33
||||||||||||||||||||||
Sbjct: 8 aatctcagctggcaactgtgag 29
>34785_tni-mir-216a:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aatctcagctggcaactgtgag 33
||||||||||||||||||||||
Sbjct: 8 aatctcagctggcaactgtgag 29
>24849_cin-mir-216:mirbase
Length = 104
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 8 gcttaatctcagctggcaa 26
|||||||||||||||||||
Sbjct: 13 gcttaatctcagctggcaa 31
