miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26004_gga-mir-216b:mirbase
Length = 89
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 acagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacct 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6 acagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacct 65
Query: 61 gtagagattct 71
|||||||||||
Sbjct: 66 gtagagattct 76
>26005_gga-mir-216c:mirbase
Length = 86
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Minus
Query: 1 acagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacct 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 82 acagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacct 23
Query: 61 gtagagattct 71
|||||||||||
Sbjct: 22 gtagagattct 12
>27100_eca-mir-216b:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 9e-13
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacctg 61
|||||||| |||||||||||||||| ||||||||| || || |||| |||| ||||| |
Sbjct: 5 cagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccg 64
Query: 62 tagagattct 71
||||||||||
Sbjct: 65 tagagattct 74
>31944_mmu-mir-216b:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 9e-13
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacctg 61
||||||||||||||||||||||||| ||||||||| | || || | |||| |||||||
Sbjct: 5 cagactgggaaatctctgcaggcaaatgtgatgtcactgaagaaaccacacacttacctg 64
Query: 62 tagagattct 71
||||||||||
Sbjct: 65 tagagattct 74
>32807_rno-mir-216b:mirbase
Length = 102
Score = 67.9 bits (34), Expect = 9e-13
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacctg 61
||||||||||||||||||||||||| ||||||||| | || |||| |||| |||| ||
Sbjct: 11 cagactgggaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttacttg 70
Query: 62 tagagattct 71
||||||||||
Sbjct: 71 tagagattct 80
>32808_rno-mir-216b:mirbase
Length = 102
Score = 67.9 bits (34), Expect = 9e-13
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacctg 61
||||||||||||||||||||||||| ||||||||| | || |||| |||| |||| ||
Sbjct: 11 cagactgggaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttacttg 70
Query: 62 tagagattct 71
||||||||||
Sbjct: 71 tagagattct 80
>33293_bta-mir-216b:mirbase
Length = 82
Score = 67.9 bits (34), Expect = 9e-13
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacctg 61
|||||||| |||||||||||||||| ||||||||| || || |||| |||| ||||| |
Sbjct: 2 cagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccg 61
Query: 62 tagagattct 71
||||||||||
Sbjct: 62 tagagattct 71
>27812_mml-mir-216b:mirbase
Length = 82
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacctg 61
|||||||| |||||||||||||||| ||||||||| | || |||| |||| ||||| |
Sbjct: 2 cagactggaaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttacccg 61
Query: 62 tagagattct 71
||||||||||
Sbjct: 62 tagagattct 71
>30910_ppy-mir-216b:mirbase
Length = 82
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacctg 61
|||||||| |||||||||||||||| ||||||||| | || |||| |||| ||||| |
Sbjct: 2 cagactggaaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttacccg 61
Query: 62 tagagattct 71
||||||||||
Sbjct: 62 tagagattct 71
>26776_cfa-mir-216b:mirbase
Length = 62
Score = 58.0 bits (29), Expect = 8e-10
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 11 aaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacctgtagagattc 70
|||||||||||||||| ||||||||| || || |||| |||| ||||| ||||||||||
Sbjct: 1 aaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagattc 60
Query: 71 t 71
|
Sbjct: 61 t 61
>28534_hsa-mir-216b:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtc 36
|||||||| |||||||||||||||| |||||||||
Sbjct: 2 cagactggaaaatctctgcaggcaaatgtgatgtc 36
>30292_ptr-mir-216b:mirbase
Length = 81
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 cagactgggaaatctctgcaggcaagtgtgatgtc 36
|||||||| |||||||||||||||| |||||||||
Sbjct: 2 cagactggaaaatctctgcaggcaaatgtgatgtc 36
>27306_eca-mir-1461:mirbase
Length = 56
Score = 48.1 bits (24), Expect = 8e-07
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 13 atctctgcaggcaagtgtgatgtctttatagcaatctcacaattacctgtagagat 68
|||||||||||||| ||||||||| || || |||| |||| ||||| ||||||||
Sbjct: 56 atctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagat 1
>34371_dre-mir-216b-1:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 8e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 gactgggaaatctctgcaggcaagtgtgatgt 35
||||||| ||||||||||||||| ||||||||
Sbjct: 4 gactgggtaatctctgcaggcaactgtgatgt 35
>34372_dre-mir-216b-2:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 8e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 gactgggaaatctctgcaggcaagtgtgatgt 35
||||||| ||||||||||||||| ||||||||
Sbjct: 3 gactgggtaatctctgcaggcaactgtgatgt 34
>25334_csa-mir-216b:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 aatctctgcaggcaagtgtgatgtc 36
||||||||||||||| |||||||||
Sbjct: 17 aatctctgcaggcaactgtgatgtc 41
>34638_fru-mir-216b:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aatctctgcaggcaagtgtgatg 34
||||||||||||||| |||||||
Sbjct: 10 aatctctgcaggcaactgtgatg 32
>34786_tni-mir-216b:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aatctctgcaggcaagtgtgatg 34
||||||||||||||| |||||||
Sbjct: 10 aatctctgcaggcaactgtgatg 32
