miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26006_gga-mir-217:mirbase
Length = 107
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 22 atgtcgcagatactgcatcaggaactgattggataataatcagtcaccatcagttcctaa 81
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 82 tgcattgccttca 94
>31537_oan-mir-217:mirbase
Length = 110
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 17 atgtcgcagatactgcatcaggaactgattggataataatcagtcaccatcagttcctaa 76
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 77 tgcattgccttca 89
>28333_ggo-mir-217:mirbase
Length = 110
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 25 atgtcgcagatactgcatcaggaactgattggataagaatcagtcaccatcagttcctaa 84
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 85 tgcattgccttca 97
>28535_hsa-mir-217:mirbase
Length = 110
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 25 atgtcgcagatactgcatcaggaactgattggataagaatcagtcaccatcagttcctaa 84
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 85 tgcattgccttca 97
>30120_ppa-mir-217:mirbase
Length = 110
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 25 atgtcgcagatactgcatcaggaactgattggataagaatcagtcaccatcagttcctaa 84
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 85 tgcattgccttca 97
>30293_ptr-mir-217:mirbase
Length = 109
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 25 atgtcgcagatactgcatcaggaactgattggataagaatcagtcaccatcagttcctaa 84
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 85 tgcattgccttca 97
>27813_mml-mir-217:mirbase
Length = 110
Score = 121 bits (61), Expect = 7e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 25 atgtcgcagattctgcatcaggaactgattggataagaatcagtcaccatcagttcctaa 84
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 85 tgcattgccttca 97
>30911_ppy-mir-217:mirbase
Length = 110
Score = 121 bits (61), Expect = 7e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 25 atgtcgcagatactgcatcaggaactgattggataagaatcagccaccatcagttcctaa 84
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 85 tgcattgccttca 97
>26777_cfa-mir-217:mirbase
Length = 82
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 4 atgtcgcagatactgcatcaggaactgattggataagaatgggtcaccatcagttcctaa 63
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 64 tgcattgccttca 76
>27431_mdo-mir-217:mirbase
Length = 82
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 4 atgtcgtagatactgcatcaggaactgattggataatattcaggcaccatcagttcctaa 63
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 64 tgcattgccttca 76
>32809_rno-mir-217:mirbase
Length = 105
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||||
Sbjct: 22 atgtcgcagatactgcatcaggaactgactggataagactcagtcaccatcagttcctaa 81
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 82 tgcattgccttca 94
>33294_bta-mir-217:mirbase
Length = 110
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
Sbjct: 25 atgtcgcagatactgcatcaggaactgattggataagaatcggtcaccatcagttcctca 84
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 85 tgcattgccttca 97
>34042_ssc-mir-217:mirbase
Length = 107
Score = 105 bits (53), Expect = 4e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct: 22 atgtcgcagatactgcatcaggaactgattggataagaattggtcaccatcagttcttaa 81
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 82 tgcattgccttca 94
>27101_eca-mir-217:mirbase
Length = 57
Score = 97.6 bits (49), Expect = 1e-21
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 11 tactgcatcaggaactgattggataataatcactcaccatcagttcctaatgcattg 67
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1 tactgcatcaggaactgattggataagaatcagtcaccatcagttcctaatgcattg 57
>31945_mmu-mir-217:mirbase
Length = 108
Score = 89.7 bits (45), Expect = 2e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||| ||||||||||||||||||||||| ||||||| | | | || ||||||||||||||
Sbjct: 24 atgttgcagatactgcatcaggaactgactggataagacttaatccccatcagttcctaa 83
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 84 tgcattgccttca 96
>34373_dre-mir-217-1:mirbase
Length = 98
Score = 56.0 bits (28), Expect = 3e-09
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 9 gatactgcatcaggaactgattggataataatcactcaccatcagttcctaatgca 64
|||||||||||||||||||||||||| ||| ||| |||||||||||| |||||
Sbjct: 23 gatactgcatcaggaactgattggatgatattcaggagccatcagttcctgatgca 78
>34374_dre-mir-217-2:mirbase
Length = 98
Score = 56.0 bits (28), Expect = 3e-09
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 9 gatactgcatcaggaactgattggataataatcactcaccatcagttcctaatgca 64
|||||||||||||||||||||||||| ||| ||| |||||||||||| |||||
Sbjct: 23 gatactgcatcaggaactgattggatgatattcaggagccatcagttcctgatgca 78
>25530_pma-mir-217a:mirbase
Length = 69
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 gatactgcatcaggaactgattggata 35
|||||||||||||||||||||||||||
Sbjct: 8 gatactgcatcaggaactgattggata 34
>25836_xtr-mir-217:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 agatactgcatcaggaactgattggat 34
|||||||||||||||||||||||||||
Sbjct: 11 agatactgcatcaggaactgattggat 37
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 ccatcagttcctaatgcattgccttc 72
|||||||||||||||||| |||||||
Sbjct: 50 ccatcagttcctaatgcactgccttc 75
>24697_bfl-mir-217:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tactgcatcaggaactgattggat 34
||||||||||||||||||||||||
Sbjct: 8 tactgcatcaggaactgattggat 31
>34639_fru-mir-217:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gatactgcatcaggaactgattgg 32
||||||||||||||||||||||||
Sbjct: 25 gatactgcatcaggaactgattgg 48
>34787_tni-mir-217:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gatactgcatcaggaactgattgg 32
||||||||||||||||||||||||
Sbjct: 14 gatactgcatcaggaactgattgg 37
>25335_csa-mir-217:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 agatactgcatcaggaactgattgg 32
||||||||||| |||||||||||||
Sbjct: 13 agatactgcattaggaactgattgg 37
