miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26011_gga-mir-222-1:mirbase
Length = 98
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 tcgctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tcgctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactggg 76
Query: 61 tctctgatgacatc 74
||||||||||||||
Sbjct: 77 tctctgatgacatc 90
>26012_gga-mir-222-2:mirbase
Length = 98
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 tcgctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tcgctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactggg 76
Query: 61 tctctgatgacatc 74
||||||||||||||
Sbjct: 77 tctctgatgacatc 90
>26519_tgu-mir-222-2:mirbase
Length = 74
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 tcgctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactggg 60
Query: 61 tctctgatgacatc 74
||||||||||||||
Sbjct: 61 tctctgatgacatc 74
>34382_dre-mir-222:mirbase
Length = 108
Score = 93.7 bits (47), Expect = 2e-20
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactgggtc 62
|||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct: 31 gctcagtagtcagtgtagatcctgtgtc-acaatcagcagctacatctggctactgggtc 89
Query: 63 tctgatg 69
|||||||
Sbjct: 90 tctgatg 96
>27107_eca-mir-222:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 2e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggctactgggt 61
||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 30 gctcagtagccagtgtagatcctgtcttttgtaatcagcagctacatctggctactgggt 89
Query: 62 ctctgatgacatc 74
|||||||| ||||
Sbjct: 90 ctctgatggcatc 102
>27820_mml-mir-222:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 2e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggctactgggt 61
||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 30 gctcagtagccagtgtagatcctgtctttcgtaatcagcagctacatctggctactgggt 89
Query: 62 ctctgatgacatc 74
|||||||| ||||
Sbjct: 90 ctctgatggcatc 102
>28543_hsa-mir-222:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 2e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggctactgggt 61
||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 30 gctcagtagccagtgtagatcctgtctttcgtaatcagcagctacatctggctactgggt 89
Query: 62 ctctgatgacatc 74
|||||||| ||||
Sbjct: 90 ctctgatggcatc 102
>30917_ppy-mir-222:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 2e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggctactgggt 61
||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 30 gctcagtagccagtgtagatcctgtctttcgtaatcagcagctacatctggctactgggt 89
Query: 62 ctctgatgacatc 74
|||||||| ||||
Sbjct: 90 ctctgatggcatc 102
>32818_rno-mir-222:mirbase
Length = 103
Score = 89.7 bits (45), Expect = 2e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggctactgggt 61
||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 23 gctcagtagccagtgtagatcctgtctttggtaatcagcagctacatctggctactgggt 82
Query: 62 ctctgatgacatc 74
|||||||| ||||
Sbjct: 83 ctctgatggcatc 95
>31542_oan-mir-222a:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 4e-18
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tcgctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactggg 60
|||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct: 25 tcgctcagtagtcagtgtagatcctgtattct-aatcagcagctacatctggctactggg 83
Query: 61 tctctga 67
|||||||
Sbjct: 84 tctctga 90
>26783_cfa-mir-222:mirbase
Length = 90
Score = 81.8 bits (41), Expect = 6e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggctactgggt 61
||||||||| |||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct: 10 gctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggctactgggt 69
Query: 62 ctctgatgacatc 74
|||||||| ||||
Sbjct: 70 ctctgatggcatc 82
>27521_age-mir-222:mirbase
Length = 110
Score = 81.8 bits (41), Expect = 6e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggctactgggt 61
||||||||| |||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct: 30 gctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggctactgggt 89
Query: 62 ctctgatgacatc 74
|||||||| ||||
Sbjct: 90 ctctgatggcatc 102
>31952_mmu-mir-222:mirbase
Length = 79
Score = 81.8 bits (41), Expect = 6e-17
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggctactgggt 61
||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 10 gctcagtagccagtgtagatcctgtctttggtaatcagcagctacatctggctactgggt 69
Query: 62 ctctg 66
|||||
Sbjct: 70 ctctg 74
>33302_bta-mir-222:mirbase
Length = 110
Score = 81.8 bits (41), Expect = 6e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggctactgggt 61
||||||||| |||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct: 30 gctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggctactgggt 89
Query: 62 ctctgatgacatc 74
|||||||| ||||
Sbjct: 90 ctctgatggcatc 102
>34047_ssc-mir-222:mirbase
Length = 80
Score = 79.8 bits (40), Expect = 2e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtc-tttacaatcagcagctacatctggctactgggt 61
||||||||| |||||||||| ||||| ||| |||||| |||||||||||||||||||||
Sbjct: 12 gctcagtagccagtgtagatcctgtcatttgtaatcagtagctacatctggctactgggt 71
Query: 62 ctctgatg 69
||||||||
Sbjct: 72 ctctgatg 79
>27435_mdo-mir-222a:mirbase
Length = 68
Score = 71.9 bits (36), Expect = 6e-14
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 35 atcagcagctacatctggctactgggtctctgatgacatc 74
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 21 atcagcagctacatctggctactgggtctctgatggcatc 60
>34646_fru-mir-222:mirbase
Length = 69
Score = 71.9 bits (36), Expect = 6e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactgggtc 62
||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 7 gctcagtaggcagtgtagatcctgtgtag-caatcagcagctacatctggctactgggtc 65
Query: 63 tctg 66
||||
Sbjct: 66 tctg 69
>34794_tni-mir-222:mirbase
Length = 68
Score = 71.9 bits (36), Expect = 6e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 3 gctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactgggtc 62
||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 6 gctcagtaggcagtgtagatcctgtgtag-caatcagcagctacatctggctactgggtc 64
Query: 63 tctg 66
||||
Sbjct: 65 tctg 68
>25841_xtr-mir-222:mirbase
Length = 64
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 2 cgctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactgggt 61
||||||||| ||||||||||| |||| | | | ||||||||||||||||||||||||||
Sbjct: 1 cgctcagtaatcagtgtagatcctgtatat-ctgtcagcagctacatctggctactgggt 59
Query: 62 ctct 65
||||
Sbjct: 60 ctct 63
>25535_pma-mir-222:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 37 cagcagctacatctggctactgggtctctg 66
|||||||||||| || ||||||||||||||
Sbjct: 52 cagcagctacatttgactactgggtctctg 81
