miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25669_xla-mir-223:mirbase
Length = 86
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtg-cagagtgtcagtttgtcaaatacc 59
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
Query: 60 ccaagtgaggca 71
||||||||||||
Sbjct: 74 ccaagtgaggca 85
>25842_xtr-mir-223:mirbase
Length = 86
Score = 111 bits (56), Expect = 6e-26
Identities = 69/72 (95%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtg-cagagtgtcagtttgtcaaatacc 59
|||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 14 gtgtatttgacaagctgagtccgacactcaatgagacagagtgtcagtttgtcaaatacc 73
Query: 60 ccaagtgaggca 71
||||||||||||
Sbjct: 74 ccaagtgaggca 85
>26013_gga-mir-223:mirbase
Length = 100
Score = 103 bits (52), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtg-cagagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct: 18 gtgtatttgacaagctgagtttgacactcagtctggcagagtgtcagtttgtcaaatacc 77
Query: 60 ccaagtgaggca 71
||||||||||||
Sbjct: 78 ccaagtgaggca 89
>27436_mdo-mir-223:mirbase
Length = 111
Score = 95.6 bits (48), Expect = 4e-21
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgt-gcagagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| |||| | |||||||||||||||||||||||
Sbjct: 31 gtgtatttgacaagctgagttggacactccgtgtcgtagagtgtcagtttgtcaaatacc 90
Query: 60 ccaagtgaggca 71
||||||||||||
Sbjct: 91 ccaagtgaggca 102
>27821_mml-mir-223:mirbase
Length = 110
Score = 87.7 bits (44), Expect = 9e-19
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccgtgtggtagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgaggca 71
||||||| ||||
Sbjct: 87 ccaagtgcggca 98
>30918_ppy-mir-223:mirbase
Length = 110
Score = 87.7 bits (44), Expect = 9e-19
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttagacactccgtgtggtagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgaggca 71
||||||| ||||
Sbjct: 87 ccaagtgcggca 98
>27628_sla-mir-223:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 4e-18
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccgtgtggtagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtg 66
|||||||
Sbjct: 87 ccaagtg 93
>31953_mmu-mir-223:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 4e-18
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactctgtgtggtagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtg 66
|||||||
Sbjct: 87 ccaagtg 93
>32819_rno-mir-223:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 4e-18
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactctgtgtggtagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtg 66
|||||||
Sbjct: 87 ccaagtg 93
>26784_cfa-mir-223:mirbase
Length = 103
Score = 79.8 bits (40), Expect = 2e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgca-gagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttagacactccatgtggaagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgaggca 71
||||||| ||||
Sbjct: 87 ccaagtgcggca 98
>27108_eca-mir-223:mirbase
Length = 104
Score = 79.8 bits (40), Expect = 2e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct: 28 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 87
Query: 60 ccaagtgaggca 71
||||||| ||||
Sbjct: 88 ccaagtgcggca 99
>28337_ggo-mir-223:mirbase
Length = 110
Score = 79.8 bits (40), Expect = 2e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgaggca 71
||||||| ||||
Sbjct: 87 ccaagtgcggca 98
>28544_hsa-mir-223:mirbase
Length = 110
Score = 79.8 bits (40), Expect = 2e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgaggca 71
||||||| ||||
Sbjct: 87 ccaagtgcggca 98
>30124_ppa-mir-223:mirbase
Length = 110
Score = 79.8 bits (40), Expect = 2e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgaggca 71
||||||| ||||
Sbjct: 87 ccaagtgcggca 98
>30301_ptr-mir-223:mirbase
Length = 110
Score = 79.8 bits (40), Expect = 2e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 60 ccaagtgaggca 71
||||||| ||||
Sbjct: 87 ccaagtgcggca 98
>31544_oan-mir-223:mirbase
Length = 124
Score = 75.8 bits (38), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgca--gagtgtcagtttgtcaaatac 58
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct: 35 gtgtatttgacaagctgagttggacactccgtgtggtttgagtgtcagtttgtcaaatac 94
Query: 59 cccaagtgaggca 71
|| ||||||||||
Sbjct: 95 cctaagtgaggca 107
>33303_bta-mir-223:mirbase
Length = 108
Score = 65.9 bits (33), Expect = 3e-12
Identities = 64/72 (88%), Gaps = 3/72 (4%)
Strand = Plus / Plus
Query: 1 gtgtatttgacaagctgagtccgacactcagtgtgcag-agtgtcagtttgtcaaatacc 59
|||||||||||||||||||| ||||||| ||| || |||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgt--agtagtgtcagtttgtcaaatacc 84
Query: 60 ccaagtgaggca 71
||||||| ||||
Sbjct: 85 ccaagtgtggca 96
>34647_fru-mir-223:mirbase
Length = 89
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 38 gagtgtcagtttgtcaaataccccaagtgagg 69
||||||||||||||||||||||||||||||||
Sbjct: 45 gagtgtcagtttgtcaaataccccaagtgagg 76
>34795_tni-mir-223:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 38 gagtgtcagtttgtcaaataccccaagtgagg 69
||||||||||||||||||||||||||||||||
Sbjct: 54 gagtgtcagtttgtcaaataccccaagtgagg 85
>34384_dre-mir-223:mirbase
Length = 99
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 40 gtgtcagtttgtcaaataccccaagtgagg 69
||||||||||||||||||||||||| ||||
Sbjct: 70 gtgtcagtttgtcaaataccccaagagagg 99
