miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26522_tgu-mir-301:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 agtgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaa 60
Query: 61 agcatctgagagc 73
|||||||||||||
Sbjct: 61 agcatctgagagc 73
>25843_xtr-mir-301-1:mirbase
Length = 84
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 2 gtgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaa 61
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 11 gtgctctgactttattgcactactgtactatacagctagcagtgcaatagtattgtcaaa 70
Query: 62 gcatctg 68
|||||||
Sbjct: 71 gcatctg 77
>31980_mmu-mir-301a:mirbase
Length = 86
Score = 111 bits (56), Expect = 7e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 3 tgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaag 62
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 13 tgctctgactttattgcactactgtactttacagcgagcagtgcaatagtattgtcaaag 72
Query: 63 catc 66
||||
Sbjct: 73 catc 76
>26788_cfa-mir-301a:mirbase
Length = 84
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 3 tgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaag 62
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 12 tgctctgactttattgcactactgtactttacagctagcagtgcaatagtattgtcaaag 71
Query: 63 catctga 69
|||||||
Sbjct: 72 catctga 78
>27112_eca-mir-301a:mirbase
Length = 86
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 3 tgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaag 62
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 13 tgctctgactttattgcactactgtactttacagctagcagtgcaatagtattgtcaaag 72
Query: 63 catctga 69
|||||||
Sbjct: 73 catctga 79
>27437_mdo-mir-301:mirbase
Length = 85
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 3 tgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaag 62
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 13 tgctctgactttattgcactactgtactttacagctagcagtgcaatagtattgtcaaag 72
Query: 63 catctga 69
|||||||
Sbjct: 73 catctga 79
>27829_mml-mir-301a:mirbase
Length = 86
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 3 tgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaag 62
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 13 tgctctgactttattgcactactgtactttacagctagcagtgcaatagtattgtcaaag 72
Query: 63 catctga 69
|||||||
Sbjct: 73 catctga 79
>28553_hsa-mir-301a:mirbase
Length = 86
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 3 tgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaag 62
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 13 tgctctgactttattgcactactgtactttacagctagcagtgcaatagtattgtcaaag 72
Query: 63 catctga 69
|||||||
Sbjct: 73 catctga 79
>30308_ptr-mir-301a:mirbase
Length = 85
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 3 tgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaag 62
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 13 tgctctgactttattgcactactgtactttacagctagcagtgcaatagtattgtcaaag 72
Query: 63 catctga 69
|||||||
Sbjct: 73 catctga 79
>33308_bta-mir-301a:mirbase
Length = 85
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 3 tgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaag 62
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 13 tgctctgactttattgcactactgtactttacagctagcagtgcaatagtattgtcaaag 72
Query: 63 catctga 69
|||||||
Sbjct: 73 catctga 79
>32837_rno-mir-301a:mirbase
Length = 100
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 3 tgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaag 62
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 23 tgctctgactttattgcactactgtactgtacagctagcagtgcaatagtattgtcaaag 82
Query: 63 catc 66
||||
Sbjct: 83 catc 86
>26015_gga-mir-301b:mirbase
Length = 90
Score = 101 bits (51), Expect = 6e-23
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 3 tgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaag 62
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 16 tgctctgactttattgcactactgtacttcacagctagcagtgcaatagtattgtcaaag 75
Query: 63 catctga 69
|||||||
Sbjct: 76 catctga 82
>26016_gga-mir-301b:mirbase
Length = 90
Score = 101 bits (51), Expect = 6e-23
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 3 tgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaag 62
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 16 tgctctgactttattgcactactgtacttcacagctagcagtgcaatagtattgtcaaag 75
Query: 63 catctga 69
|||||||
Sbjct: 76 catctga 82
>31545_oan-mir-301:mirbase
Length = 121
Score = 101 bits (51), Expect = 6e-23
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 3 tgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaag 62
||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 35 tgctctgactttattgcactactgttctttacagctagcagtgcaatagtattgtcaaag 94
Query: 63 catctga 69
|||||||
Sbjct: 95 catctga 101
>34051_ssc-mir-301:mirbase
Length = 82
Score = 101 bits (51), Expect = 6e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 3 tgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaag 62
|||||||||||||||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 10 tgctctgactttattgcactactgtactttacagctaccagtccaatagtattgtcaaag 69
Query: 63 catctgagagc 73
|||||||||||
Sbjct: 70 catctgagagc 80
>34385_dre-mir-301a-1:mirbase
Length = 86
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 2 gtgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaa 61
|||||||||||| |||||||||||||| | |||| |||||||||||||||||||||||
Sbjct: 12 gtgctctgacttcattgcactactgtattggacagctagcagtgcaatagtattgtcaaa 71
Query: 62 gcatctgagagc 73
|| |||||||||
Sbjct: 72 gcgtctgagagc 83
>34386_dre-mir-301a-2:mirbase
Length = 86
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 2 gtgctctgactttattgcactactgtactatacagagagcagtgcaatagtattgtcaaa 61
|||||||||||| |||||||||||||| | |||| |||||||||||||||||||||||
Sbjct: 12 gtgctctgacttcattgcactactgtattggacagctagcagtgcaatagtattgtcaaa 71
Query: 62 gcatctgagagc 73
|| |||||||||
Sbjct: 72 gcgtctgagagc 83
>25538_pma-mir-301b:mirbase
Length = 88
Score = 56.0 bits (28), Expect = 3e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcatctgag 70
||||||||||||| ||||||||||||||||||
Sbjct: 51 agcagtgcaatagcattgtcaaagcatctgag 82
>25844_xtr-mir-301-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcat 65
|||||||||||||||||||||||||||
Sbjct: 42 agcagtgcaatagtattgtcaaagcat 68
>31981_mmu-mir-301b:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcatctg 68
||||||||||| ||||||||||||||||||
Sbjct: 53 agcagtgcaatggtattgtcaaagcatctg 82
>32838_rno-mir-301b:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcatctg 68
||||||||||| ||||||||||||||||||
Sbjct: 43 agcagtgcaatggtattgtcaaagcatctg 72
>26014_gga-mir-301:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcat 65
|||||||||||| ||||||||||||||
Sbjct: 55 agcagtgcaataatattgtcaaagcat 81
>34388_dre-mir-301c:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcat 65
||||||||||||||||||||| |||||
Sbjct: 48 agcagtgcaatagtattgtcatagcat 74
>34648_fru-mir-301:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcat 65
||||||||||||||||||||| |||||
Sbjct: 42 agcagtgcaatagtattgtcatagcat 68
>34796_tni-mir-301:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcat 65
||||||||||||||||||||| |||||
Sbjct: 46 agcagtgcaatagtattgtcatagcat 72
>25537_pma-mir-301a:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 gagcagtgcaatagtattgtcaaagc 63
|||||||||||| |||||||||||||
Sbjct: 57 gagcagtgcaattgtattgtcaaagc 82
>27113_eca-mir-301b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcatctg 68
||||||||||| |||||||||||||||||
Sbjct: 53 agcagtgcaatgatattgtcaaagcatctg 82
>27114_eca-mir-301b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcatctg 68
||||||||||| |||||||||||||||||
Sbjct: 53 agcagtgcaatgatattgtcaaagcatctg 82
>27830_mml-mir-301b:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcatctg 68
||||||||||| |||||||||||||||||
Sbjct: 42 agcagtgcaatgatattgtcaaagcatctg 71
>28554_hsa-mir-301b:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcatctg 68
||||||||||| |||||||||||||||||
Sbjct: 43 agcagtgcaatgatattgtcaaagcatctg 72
>30309_ptr-mir-301b:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcatctg 68
||||||||||| |||||||||||||||||
Sbjct: 42 agcagtgcaatgatattgtcaaagcatctg 71
>30927_ppy-mir-301b:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcatctg 68
||||||||||| |||||||||||||||||
Sbjct: 43 agcagtgcaatgatattgtcaaagcatctg 72
>33309_bta-mir-301b:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 gagcagtgcaatagtattgtcaaagcatc 66
|||||||||||| |||||||||||||||
Sbjct: 50 gagcagtgcaatgatattgtcaaagcatc 78
>34387_dre-mir-301b:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtca 59
|||||||||||||||||||||
Sbjct: 47 agcagtgcaatagtattgtca 67
>26789_cfa-mir-301b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 39 agcagtgcaatagtattgtcaaagcatc 66
||||||||||| |||||||||||||||
Sbjct: 41 agcagtgcaatgatattgtcaaagcatc 68
